looking at the R package and on the Docker build instructions, R seems
to be installed with cairo support:
Are you using the latest IUC packages?
Your script seems to be fine, I can not spot any obvious error.
But I don't know how your dependencies are defined and which env vars
Am 26.08.2015 um 12:18 schrieb Christian Brenninkmeijer:
> Still looking for an example tool_dependencies.xml to install R Cairo package
> Farther update.
> package_cairo_1_12_14 needs to be at the same level as package_r_3_1_2 inside
> of setup_r_environment without the set_environment_for_install
> I am no longer getting cairo.h No but am still getting
> checking if R was compiled with the RConn patch... no
> checking for ATS font support in Cairo... no
> checking whether Cairo programs can be compiled...
> ERROR: configuration failed for package ‘Cairo’
> Again updated tool_dependencies.xml attached
> From: galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on behalf of
> Christian Brenninkmeijer [christian.brenninkmei...@manchester.ac.uk]
> Sent: Wednesday, August 26, 2015 10:18 AM
> To: galaxy-dev [email@example.com]
> Subject: [galaxy-dev] Installing Cairo into Gakaxy
> Hi All,
> Has anyone got a working example tool_dependencies.xml to install the Cairo
> package into R.
> (I actually need a package that depends on R Cairo but the current issue is
> I am having the cairo.h not found issue
> I have cloned
> (and its dependencies)
> As well as
> I am trying to use <action type="setup_r_environment">
> But can not get the package_cairo to be seen by the R
> I have tried <action type="set_environment_for_install"> both inside and
> outside of the setup_r_environment but it does not appear to be working,
> Full attempted tool_dependencies.xml attached,
> Thanks in advance
> University of Manchester
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