And does
find /usr/local/include -name container.hpp
or
find / -name container.hpp
return torque/src/include/container.hpp ?

My guess is you installed binaries for Torque, but the scrambling requires
the Torque source (or at least the header files form Torque).

-Will

On Thu, Sep 24, 2015 at 1:16 AM, Makis Ladoukakis <makis4e...@hotmail.com>
wrote:

> Hello Will,
>
> Thanks again for your reply. Yes I had already tried these but I got the
> same container.hpp error.
>
> The only thing different in my case is that the names of the directories
> of the directories are a bit different:
>
> export PBS_PYTHON_INCLUDEDIR=/usr/local/include/
> export PBSCONFIG=/usr/local/bin/pbs-config
> export LIBTORQUE_DIR=/usr/local/lib/libtorque.so
> python scripts/scramble.py -e pbs_python
>
> Any ideas?
>
> Kind regards,
> Makis
>
>
>
> ------------------------------
> Date: Wed, 23 Sep 2015 07:06:32 -0700
>
> Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
> From: who...@lygos.com
> To: makis4e...@hotmail.com
> CC: galaxy-dev@lists.galaxyproject.org
>
> Hi Makis,
>
> The thread I posted does have the exact same container.hpp error and
> proposes a solution.
>
> Did you try setting your PBS_PYTHON_INCLUDEDIR to point to your
> torque/include directory, as mentioned in that thread?
>
> from the thread:
>
> export PBS_PYTHON_INCLUDEDIR=/usr/local/torque/include/
> export PBSCONFIG=/usr/local/torque/bin/pbs-config
> export LIBTORQUE_DIR=/usr/local/torque/lib/libtorque.so
>
>
> -Will
>
>
> On Wed, Sep 23, 2015 at 5:49 AM, Makis Ladoukakis <makis4e...@hotmail.com>
> wrote:
>
> Hello Will,
>
> Thank you for your reply. I had already checked this thread before as I
> browsed through the mailing list for "pbs_python" issues. It doesn't have
> the same errors (can't locate log.h and when i provide it it wants the
> container.hpp ) and up to one point i've already followed the
> "rescrambling" of the pbs_python.
>
> Anyone else had any experience with that?
>
> Thank you,
> Makis
>
> ------------------------------
> Date: Tue, 22 Sep 2015 09:35:11 -0700
> Subject: Re: [galaxy-dev] pbs_python can't be installed via scramble
> From: who...@lygos.com
> To: makis4e...@hotmail.com
> CC: galaxy-dev@lists.galaxyproject.org
>
>
> Here is an old thread that looks rather similar to your problems:
>
> https://www.mail-archive.com/galaxy-dev@lists.galaxyproject.org/msg00078.html
>
> -Will
>
>
> On Tue, Sep 22, 2015 at 2:43 AM, Makis Ladoukakis <makis4e...@hotmail.com>
> wrote:
>
> Hello everyone,
>
> I'm trying to set up a Galaxy instance on a multi-core server in my
> university so according to the instructions here:
>
> https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS
>
> I installed Torque, changed the eggs.ini file by adding the 4.4.0. version
> of pbs_python
>
> and tried to setup pbs_python via scramble:
>
> LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python
>
> When I did that I got the error:
>
> Failed to find log.h in inlcude dir /usr/include/torque. (Set incude dir
> via PBS_PYTHON_INCLUDEDIR variable)
> Traceback (most recent call last):
>   File "scripts/scramble.py", line 50, in <module>
>     egg.scramble()
>   File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 57, in
> scramble
>     self.run_scramble_script()
>   File "/home/galaxy/galaxy/lib/galaxy/eggs/scramble.py", line 210, in
> run_scramble_script
>     raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % (
> sys._getframe().f_code.co_name, self.name, self.version ) )
> galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build
> failed for pbs_python 4.4.0
>
> so I did some digging around and found that the file I need is in
>
> /scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
>
> (please correct me if I am wrong)
>
> So I tried again using:
>
>  
> PBS_PYTHON_INCLUDEDIR=/home/galaxy/galaxy/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python/src/C++/
> LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py -e pbs_python
>
> but then I got the error:
>
> In file included from src/C++/pbs_ifl.h:90:0,
>                  from src/C++/pbs_wrap.cxx:2978:
> /usr/local/include/u_hash_map_structs.h:82:25: fatal error: container.hpp:
> No such file or directory
>  #include "container.hpp"
>
>
> Can someone help me please?
>
> Kind regards,
> Makis
>
>
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