Guys, I can express how thankful I am for your help!!!

Personally, I would comment out the following line in the tbl2asn code:

8869<http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/source/demo/tbl2asn.c#L8869>
   if 
(MoreThanYearOld<http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/ident?i=MoreThanYearOld>
 ()) {
8870<http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/source/demo/tbl2asn.c#L8870>
     too_old = 
TRUE<http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/ident?i=TRUE>;
8871<http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/source/demo/tbl2asn.c#L8871>
     Message<http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/ident?i=Message> 
(MSG_POST<http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/ident?i=MSG_POST>, 
"This copy of tbl2asn is more than a year old.  Please download the current 
version.");
8872<http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/source/demo/tbl2asn.c#L8872>
   }



In the meantime, would you suggest I change the files located inside my galaxy 
installation?
Or should I wait for Philip’s release?

I ask because I found the following binary files:
-rwxr-x--- 1 galaxy users 7349340 Sep 15 08:52
./tool-data/toolshed.dependency.dir/tbl2asn/23.7/takadonet/package_tbl2asn_23_7/2271d52a8531/bin/tbl2asn

-rwxrwxr-x 1 galaxy users 12675348 Jul 28  2014
./tool-data/toolshed.dependency.dir/prokka/1.10/crs4/prokka/3ad7ef0ba385/binaries/darwin/tbl2asn

-rwxrwxr-x 1 galaxy users 6872896 Jul 28  2014
./tool-data/toolshed.dependency.dir/prokka/1.10/crs4/prokka/3ad7ef0ba385/binaries/linux/tbl2asn

Oddly, they’re all different.
What exactly can I do with this and how can I compile the tblasn.c file?

Cordialement / Regards,
Edgar Fernandez

De : Philip Mabon [mailto:philipma...@gmail.com]
Envoyé : September-29-15 10:27 AM
À : Peter Cock; Fernandez Edgar; Nicola Soranzo (TGAC)
Cc : Björn Grüning; galaxy-...@bx.psu.edu
Objet : Re: [galaxy-dev] not sure what I can do about this...

I will make a new package for tbl2asn. Our lab is not too happy that tbl2asn 
expires and causes lots of issues for us.



On Tue, Sep 29, 2015 at 9:24 AM Peter Cock 
<p.j.a.c...@googlemail.com<mailto:p.j.a.c...@googlemail.com>> wrote:
On Tue, Sep 29, 2015 at 1:12 PM, Fernandez Edgar
<edgar.fernan...@umontreal.ca<mailto:edgar.fernan...@umontreal.ca>> wrote:
> Hello Björn,
>
> Thank you for answering!
> When I installed Prokka from the Galaxy ToolShed, all the dependencies were 
> installed too.
> tbl2asn is one of those dependencies...
> How would I replace it?
>
> Cordialement / Regards,
> Edgar Fernandez

The way the NCBI deliberately make tbl2asn expire is very
annoying for packaging and breaks strict reproducibility :(

I think Bjoern was suggesting manually updating the copy of tbl2asn
which the Tool Shed had downloaded (as a quick short term solution).
You'd need to find this file within the Tool Shed dependencies folder...

Philip - can you update package_tbl2asn_23_7 or add a new
package if the version number has changed? Or would you like
the IUC group to look after this in future?

https://toolshed.g2.bx.psu.edu/view/takadonet/package_tbl2asn_23_7/

Nicola - once that's done, can you update the prokka dependency
list - or would that fall to your old colleagues at CRS4?

https://toolshed.g2.bx.psu.edu/view/crs4/prokka/

Peter
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