Guys, I can express how thankful I am for your help!!!

Personally, I would comment out the following line in the tbl2asn code:

 ()) {
     too_old = 
"This copy of tbl2asn is more than a year old.  Please download the current 

In the meantime, would you suggest I change the files located inside my galaxy 
Or should I wait for Philip’s release?

I ask because I found the following binary files:
-rwxr-x--- 1 galaxy users 7349340 Sep 15 08:52

-rwxrwxr-x 1 galaxy users 12675348 Jul 28  2014

-rwxrwxr-x 1 galaxy users 6872896 Jul 28  2014

Oddly, they’re all different.
What exactly can I do with this and how can I compile the tblasn.c file?

Cordialement / Regards,
Edgar Fernandez

De : Philip Mabon []
Envoyé : September-29-15 10:27 AM
À : Peter Cock; Fernandez Edgar; Nicola Soranzo (TGAC)
Cc : Björn Grüning;
Objet : Re: [galaxy-dev] not sure what I can do about this...

I will make a new package for tbl2asn. Our lab is not too happy that tbl2asn 
expires and causes lots of issues for us.

On Tue, Sep 29, 2015 at 9:24 AM Peter Cock 
<<>> wrote:
On Tue, Sep 29, 2015 at 1:12 PM, Fernandez Edgar
<<>> wrote:
> Hello Björn,
> Thank you for answering!
> When I installed Prokka from the Galaxy ToolShed, all the dependencies were 
> installed too.
> tbl2asn is one of those dependencies...
> How would I replace it?
> Cordialement / Regards,
> Edgar Fernandez

The way the NCBI deliberately make tbl2asn expire is very
annoying for packaging and breaks strict reproducibility :(

I think Bjoern was suggesting manually updating the copy of tbl2asn
which the Tool Shed had downloaded (as a quick short term solution).
You'd need to find this file within the Tool Shed dependencies folder...

Philip - can you update package_tbl2asn_23_7 or add a new
package if the version number has changed? Or would you like
the IUC group to look after this in future?

Nicola - once that's done, can you update the prokka dependency
list - or would that fall to your old colleagues at CRS4?

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to