Just a quick check - did you refresh your history to confirm that the dataset *is* empty? We had the same thing at SANBI but it turns out that Galaxy creates an empty output collection and then only populates it sometime after job completion (this is a know UI bug).
See: http://pvh.wp.sanbi.ac.za/2015/09/18/adventures-in-galaxy-output-collections/ On 20 October 2015 at 08:48, Steve Cassidy <steve.cass...@mq.edu.au> wrote: > Hi all, > I'm trying to understand how to write a tool that generates a dataset > rather than a single output file. I've tried following all of the examples > but I'm stuck, so I thought I would distil down the simplest example I > could write and ask for help here. > > So here's my example: > > https://gist.github.com/stevecassidy/0fa45ad5853faacb5f55 > > it's a simple python script that writes three files to a directory named > for the single input parameter. > > I think one of the problems I'm having is knowing where to write the > output to. I've run this under planemo serve and the job runs, creating the > output directory within the 'job_working_directory/000/1/SampleDataset' > directory, however my dataset doesn't contain anything so clearly my > outputs directive isn't working: > > <outputs> > <collection type="list" label="$job_name" name="output1"> > <discover_datasets pattern="__name_and_ext__" > directory="$job_name" /> > </collection> > </outputs> > > ($job_name is the name of the directory that is being written to, > SampleDataset in this case) > > Any help in getting this example working would be appreciated. > > Thanks, > > Steve > > > > > > -- > Department of Computing, Macquarie University > http://web.science.mq.edu.au/~cassidy/ > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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