Thanks Peter,
  I did see that proviso somewhere but no, refreshing doesn't help.

That page was one of those that I referred to getting to this point.

Steve

On 20 October 2015 at 18:33, Peter van Heusden <p...@sanbi.ac.za> wrote:

> Just a quick check - did you refresh your history to confirm that the
> dataset *is* empty? We had the same thing at SANBI but it turns out that
> Galaxy creates an empty output collection and then only populates it
> sometime after job completion (this is a know UI bug).
>
> See:
> http://pvh.wp.sanbi.ac.za/2015/09/18/adventures-in-galaxy-output-collections/
>
> On 20 October 2015 at 08:48, Steve Cassidy <steve.cass...@mq.edu.au>
> wrote:
>
>> Hi all,
>>   I'm trying to understand how to write a tool that generates a dataset
>> rather than a single output file.  I've tried following all of the examples
>> but I'm stuck, so I thought I would distil down the simplest example I
>> could write and ask for help here.
>>
>> So here's my example:
>>
>> https://gist.github.com/stevecassidy/0fa45ad5853faacb5f55
>>
>> it's a simple python script that writes three files to a directory named
>> for the single input parameter.
>>
>> I think one of the problems I'm having is knowing where to write the
>> output to. I've run this under planemo serve and the job runs, creating the
>> output directory within the 'job_working_directory/000/1/SampleDataset'
>> directory, however my dataset doesn't contain anything so clearly my
>> outputs directive isn't working:
>>
>>     <outputs>
>>         <collection type="list" label="$job_name" name="output1">
>>             <discover_datasets pattern="__name_and_ext__"
>> directory="$job_name" />
>>         </collection>
>>     </outputs>
>>
>> ($job_name is the name of the directory that is being written to,
>> SampleDataset in this case)
>>
>> Any help in getting this example working would be appreciated.
>>
>> Thanks,
>>
>> Steve
>>
>>
>>
>>
>>
>> --
>> Department of Computing, Macquarie University
>> http://web.science.mq.edu.au/~cassidy/
>>
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>
>
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-- 
Department of Computing, Macquarie University
http://web.science.mq.edu.au/~cassidy/
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