Hello Yoong,

The best place to ask questions like this is the Galaxy Dev mailing list 
(galaxy-dev@lists.galaxyproject.org).  There are many developers that support 
this mailing list, so you  will undoutedly receive optimal answers to any of 
your questions.  I’ve forwarded your current questions to the mailing list.


Greg Von Kuster

> On Oct 28, 2015, at 12:56 AM, 홍윤지 <yoong0...@gmail.com> wrote:
> hey, my name is yoong in korean student .
> i'd like to run the program name Mapsplice2, so i made a xml file, and submit 
> that
> this is my xml file..
> <tool id="mapsplice" name="Mapsplice" version="2.2.0">
>     <description>MapSplice2 Description</description>
>     <command interpreter="python">
>     /home/yoong/galaxy/tools/MapSplice-v2.1.9/mapsplice.py -o 
> $alignments.files_path -p 20 --qual-scale phred33 --bam --fusion -c 
> /home/yoong/1_reference/hg19 -x /home/yoong/1_reference/BowtieIndex -1 
> $input_reads_1 -2 $input_reads_2
>     </command>
>     <inputs>
>         <param format="fastq" name="input_reads_1" type="data" label="Source 
> file1"/>
>         <param format="fastq" name="input_reads_2" type="data" label="Source 
> file2"/>
>     </inputs>
>     <outputs>
>         <data format="bam" name="alignments" label="alignments.bam"/>
>         <data format="txt" name="deletions" label="deletions.txt"/>
>         <data format="txt" name="fusions_candidates" 
> label="fusions_candidates.txt"/>
>         <data format="txt" name="fusions_raw" label="fusions_raw"/>
>         <data format="txt" name="insertions" label="insertions.txt"/>
>         <data format="txt" name="junctions" label="junctions.txt"/>
>         <data format="txt" name="stats" label="stats.txt"/>
>     </outputs>
>     <help>
>         Help
>     </help>
> </tool>
> and, look at the report error, there is no special error... what's was the 
> problom..? Do I something wrong ?... 
> plz help me...!! Thank you ...

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