Hello Bjoern and Oliver. Thank you for the emails. I changed to testtoolshed, but recieved the following error with openms 1.2 (testtoolshed.g2.bx.psu.edu/repos/bgruening/openms/ec62782f6c68/openms):
*CMake Error at libraries.cmake/boost.cmake:122 (message): Performing configuration checks - gcc visibility : yes - long double support : yes - has_icu builds : yes Component configuration: - chrono : not building - context : not building - date_time : building - exception : not building - filesystem : not building - graph : not building - graph_parallel : not building - iostreams : building - locale : not building - math : building - mpi : not building - program_options : not building - python : not building - random : not building - regex : building - serialization : not building - signals : not building - system : not building - test : not building - thread : not building - timer : not building - wave : not building ...patience... ...patience... ...found 23291 targets... ...updating 11320 targets... common.mkdir bin.v2/libs/date_time common.mkdir bin.v2/libs/iostreams common.mkdir bin.v2/libs/math/build common.mkdir bin.v2/libs/math/config/gcc-4.8/release common.mkdir 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/home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/spirit.hpp common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/shared_container_iterator.hpp common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/static_assert.hpp common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/filesystem.hpp common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/swap.hpp ...on 100th target... common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/foreach_fwd.hpp common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/pointer_cast.hpp common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/version.hpp common.copy 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bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/libboost_date_time-mt-sd.a common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-s.a common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt-sd.a gcc.compile.c++ bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/gregorian/greg_month.o gcc.archive bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/libboost_date_time-mt-d.a common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt-d.a gcc.compile.c++ bin.v2/libs/date_time/build/gcc-4.8/release/link-static/gregorian/greg_month.o gcc.compile.c++ bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/gregorian/greg_month.o gcc.archive bin.v2/libs/date_time/build/gcc-4.8/release/link-static/libboost_date_time.a common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time.a gcc.archive bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/libboost_date_time-mt.a common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt.a gcc.compile.c++ bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/gregorian/greg_month.o ...on 11300th target... gcc.archive bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/libboost_date_time-d.a common.copy /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-d.a ...failed updating 126 targets... ...skipped 18 targets... ...updated 11176 targets...Call Stack (most recent call first): CMakeLists.txt:461 (OPENMS_CONTRIB_BUILD_BOOST)* What did I do wrong? Thank you in advance. Mic On Fri, Nov 6, 2015 at 1:13 AM, Björn Grüning <[email protected]> wrote: > Hi Mic and Olivier, > > if there is broader interest in OpenMS please let me know. > We have new wrappers and new installation instructions here: > > https://github.com/bgruening/galaxytools/tree/master/tools/openms > > + pre-compiled binaries as this takes ages to compile. > Cheers, > Bjoern > > Am 05.11.2015 um 15:24 schrieb Olivier CLAUDE: > > Hello Mic, > > > > > > > > You should try to change the link in the tool_dependencies.xml of openMS > with this link : > > > > > > > > < > http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/> > > http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/ > > > > > > > > and then repair the package > > > > > > > > regards, > > > > > > > > Olivier. > > > > > > > > > > > > > > > > De : galaxy-dev [mailto:[email protected]] De > la part de Mic > > Envoyé : jeudi 5 novembre 2015 15:21 > > À : galaxy-dev <[email protected]> > > Objet : [galaxy-dev] OpenMS caused Error downloading from URL > > > > > > > > Hello > > > > I tried to install OpenMS ( > toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms < > http://toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms> > ), but I have got the following error: > > > > > > > > File > "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", > line 128, in install_and_build_package_via_fabric > > > > tool_dependency = self.install_and_build_package( > install_environment, tool_dependency, actions_dict ) > > > > File > "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", > line 86, in install_and_build_package > > > > initial_download=True ) > > > > File > "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", > line 31, in execute_step > > > > initial_download=initial_download ) > > > > File > "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", > line 694, in execute_step > > > > dir = self.url_download( work_dir, downloaded_filename, url, > extract=True, checksums=checksums ) > > > > File > "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", > line 187, in url_download > > > > raise Exception( err_msg ) > > > > > > > > Error downloading from URL > > > > > http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.10.0/OpenMS-1.10.0.tar.gz > : > > > > HTTP Error 404: Not Found > > > > > > > > Thank you in advance. > > > > > > > > Mic > > > > > > > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > https://lists.galaxyproject.org/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > >
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