Dear Galaxy Developers, I would like to have this tool integrated into Galaxy. It is similar to SignalP, however, where SignalP predict conventional secretion / membrane integration, SecretomeP predicts unconventional secretion. More information is in the attached paper.
A browser-version of SecretomeP v2.0 is available at http://www.cbs.dtu.dk/services/SecretomeP/ However, it is restricted to 100 uploaded sequences, so processing of large datasets is tedious. Therefore, integration into Galaxy would be great! A portable version of SecretomeP exists and is available here: http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?secretomep It is only v1.0, but the difference between the versions is minimal (see also attached email of the developers). There is one caveat: SecretomeP can deal with sequences only up to 4,000 amino acids (I am not sure, if including or excluding the 4,000). It would be great to integrate a small preselection to sort out longer sequences into the Galaxy tool. Kind regards, Florian Sigloch P.S.: I am currently writing up my PhD thesis and I am short on time. Would it be possible to integrate SecretomeP in 2-4 weeks? Pleeeeease? P.P.S.: I have been in contact with Dr. Björn Grüning about this, but I do not want to bother him during his current trip to the US. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
