I noticed something strange in my (latest) galaxy-dist. I have around 10-20
workflows, which are in certain cases very similar for e.g. slightly different
experimental setups with the same output. I then usually copy the first wf and
adapt a few steps to fit the second one. Anyway, they are on a testserver and I
export them to import in my production instance. There I noticed that sometimes
in (always the same 3) workflows, the export to json changes the ‘name’
attribute of the workflow. So when importing them in production, the wf has a
I haven’t been able to pinpoint where the problem lies, but the new name is
very similar to the old one. I therefore believe that it may be that I have
copied the workflow and the name of the source-wf is hanging around in some db
table somewhere. Unlikely as it sounds. To be more specific it doesn’t show up
when I do bioblend: workflows.show_workflow(id=x), but only when
export_workflow_json(). It only happens in 3 of my workflows and I have surely
copied more of them.
Easy enough to workaround though, and kind of hoping this is a glitch in my
setup only but wanted to let you know.
Proteomics systems developer
BILS / Lehtiö lab
Scilifelab Stockholm, Sweden
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