Hi Tiago, Björn,

I'm strongly interested by a RADseq hackathon! I begin to exchange with some 
colleagues (Cced), indeed there will be at least 2 others french labs 
interested. Maria have developped some scripts for STACKS, and putting it on 
the Galaxy will be cool. Here, we have developped a recent update of our Stacks 
descriptors and wrappers, Anthony & us think that it can be interesting to try 
using Interactive Environment to propose the use of the Stacks webinterface + 
database to correct haplotypes...... or not ;) Furthermore, we begin using 
other pipelines as Ddocent and it will be cool to put it on Galaxy....

So ready to go further with a remote hackathon. Maybe on March or April 2016 ?

Wishing you the best.

Cheers,
Yvan

----- Mail original -----
> De: "Björn Grüning" <bjoern.gruen...@gmail.com>
> À: "Tiago Antao" <t...@popgen.net>, "galaxy-dev" 
> <galaxy-dev@lists.galaxyproject.org>, "galaxy-iuc"
> <galaxy-...@lists.bx.psu.edu>
> Envoyé: Lundi 23 Novembre 2015 17:52:35
> Objet: Re: [galaxy-dev] Potential Hackathon proposal: RADSeq
> 
> Hi Tiago,
> 
> I like this idea very much and I will try to help as much as I can.
> 
> I hope someone else will join otherwise I will be in for a tandem hack :)
> 
> Cheers,
> Bjoern
> 
> Am 16.11.2015 um 17:05 schrieb Tiago Antao:
> > Dear all,
> > 
> > This is an email to inquire about the potential community interest in
> > having a RADSeq hackathon.
> > 
> > There has been quite some interest in analyzing RADSeq with Galaxy. As
> > far as I know there are essentially only two tools dedicated to this,
> > wrapping stacks and prada.
> > 
> > I have been exchanging emails with the authors of the stacks tool (Yvan
> > is Cced here) and they seem to have interest in pursuing this also.
> > 
> > Where I am based now, we have quite a few RADSeq users that can advise
> > on needs of the RADSeq community (obviously if others have any ideas,
> > those would be most welcome).
> > 
> > We also have good connections to some of the researchers involved with
> > creating the technology, whom I believe could provide some advice on
> > what we need to implement.
> > 
> > RADSeq is a cheap sequencing technology that is used by many
> > resource-limited groups and they would potentially benefit a lot from
> > easy-to-use galaxy tools.
> > 
> > Any interest in this?
> > 
> > Tiago
> > ___________________________________________________________
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-- 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Yvan Le Bras, PhD @Yvan2935 <°))))>< 
e-Biogenouest project http://www.e-biogenouest.org 
CNRS UMR 6074 IRISA-INRIA, Campus de Beaulieu, 35042 Rennes Cedex 
tél.: +33 (0) 2 99 84 71 79 / +33 (0) 6.10.43.96.51 
yvan.le_b...@irisa.fr 

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