Knowing nothing about RADseq... Maybe you all would consider doing something akin to Marten's mention of the Jenkins hackathons where they have short (10-30 minute) seminars on background information related to the area so that the more experienced volunteers can better help out the newcomers?
On 11/23/2015 12:05 PM, Björn Grüning wrote: > Yvan, this sounds great! > > I think it's up to Tiago to pick a date :) > > Am 23.11.2015 um 18:55 schrieb Yvan Le Bras: > > Hi Tiago, Björn, > > > > I'm strongly interested by a RADseq hackathon! I begin to exchange > > with some colleagues (Cced), indeed there will be at least 2 others > > french labs interested. Maria have developped some scripts for > > STACKS, and putting it on the Galaxy will be cool. Here, we have > > developped a recent update of our Stacks descriptors and wrappers, > > Anthony & us think that it can be interesting to try using > > Interactive Environment > > Sweet! Have a look at this document were I collected some ideas how this > could work: > > https://gist.github.com/bgruening/4414529ff0d951f94ef6 > > > to propose the use of the Stacks webinterface > > + database to correct haplotypes...... or not ;) Furthermore, we > > begin using other pipelines as Ddocent and it will be cool to put it > > on Galaxy.... > > > > So ready to go further with a remote hackathon. Maybe on March or > > April 2016 ? > > I will leave this decision to Tiago :) > But this all sounds very interesting! > > Cheers, > Bjoern > > > Wishing you the best. > > > > Cheers, Yvan > > > > ----- Mail original ----- > >> De: "Björn Grüning" <bjoern.gruen...@gmail.com> À: "Tiago Antao" > >> <t...@popgen.net>, "galaxy-dev" > >> <galaxy-dev@lists.galaxyproject.org>, "galaxy-iuc" > >> <galaxy-...@lists.bx.psu.edu> Envoyé: Lundi 23 Novembre 2015 > >> 17:52:35 Objet: Re: [galaxy-dev] Potential Hackathon proposal: > >> RADSeq > >> > >> Hi Tiago, > >> > >> I like this idea very much and I will try to help as much as I > >> can. > >> > >> I hope someone else will join otherwise I will be in for a tandem > >> hack :) > >> > >> Cheers, Bjoern > >> > >> Am 16.11.2015 um 17:05 schrieb Tiago Antao: > >>> Dear all, > >>> > >>> This is an email to inquire about the potential community > >>> interest in having a RADSeq hackathon. > >>> > >>> There has been quite some interest in analyzing RADSeq with > >>> Galaxy. As far as I know there are essentially only two tools > >>> dedicated to this, wrapping stacks and prada. > >>> > >>> I have been exchanging emails with the authors of the stacks tool > >>> (Yvan is Cced here) and they seem to have interest in pursuing > >>> this also. > >>> > >>> Where I am based now, we have quite a few RADSeq users that can > >>> advise on needs of the RADSeq community (obviously if others have > >>> any ideas, those would be most welcome). > >>> > >>> We also have good connections to some of the researchers involved > >>> with creating the technology, whom I believe could provide some > >>> advice on what we need to implement. > >>> > >>> RADSeq is a cheap sequencing technology that is used by many > >>> resource-limited groups and they would potentially benefit a lot > >>> from easy-to-use galaxy tools. > >>> > >>> Any interest in this? > >>> > >>> Tiago > >>> ___________________________________________________________ > >>> Please keep all replies on the list by using "reply all" in your > >>> mail client. To manage your subscriptions to this and other > >>> Galaxy lists, please use the interface at: > >>> https://lists.galaxyproject.org/ > >>> > >>> To search Galaxy mailing lists use the unified search at: > >>> http://galaxyproject.org/search/mailinglists/ > >>> > >> ___________________________________________________________ Please > >> keep all replies on the list by using "reply all" in your mail > >> client. To manage your subscriptions to this and other Galaxy > >> lists, please use the interface at: > >> https://lists.galaxyproject.org/ > >> > >> To search Galaxy mailing lists use the unified search at: > >> http://galaxyproject.org/search/mailinglists/ > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > Ciao, Eric -- Eric Rasche Programmer II Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 e...@tamu.edu ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
