I have tried to remove the bx-python and numpy eggs and then I have fetched
them again but this didn't work neither.
Any idea why bx-python is not recognizing the proper numpy version?
2015-11-27 0:53 GMT+01:00 Jose Juan Almagro Armenteros <jjalma...@gmail.com>
> I am in the master branch and I recently pull all the changes to my local
> Galaxy. However, when I run one tool I obtained this error:
> Fatal error: Matched on Error:
> Traceback (most recent call last):
> line 1, in <module>
> from galaxy_ext.metadata.set_metadata import set_metadata; set_metadata()
> line 27, in <module>
> import galaxy.model.mapping # need to load this before we unpickle, in
> order to setup properties assigned by the mappers
> line 21, in <module>
> from galaxy.model.custom_types import JSONType, MetadataType,
> TrimmedString, UUIDType
> line 15, in <module>
> from galaxy import app
> File "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/app.py", line
> 14, in <module>
> from galaxy.visualization.data_providers.registry import
> line 2, in <module>
> from galaxy.visualization.data_providers import genome
> line 16, in <module>
> from bx.bbi.bigbed_file import BigBedFile
> File "bigbed_file.pyx", line 1, in init bx.bbi.bigbed_file
> File "numpy.pxd", line 155, in init bx.bbi.bbi_file
> ValueError: numpy.dtype has the wrong size, try recompiling
> I suppose there is a problem with the bx-python or numpy egg but I am not
> really sure if is this. I run check_eggs.py and it did nothing and I also
> try to update numpy for the system, which didn't work neither.
> Do you know which numpy should I recompile in order to get this to work?
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