Hi Martin,

Thanks very much for your reply, and also to Marius.

After some investigation, it appears that there is a firewall issue on my
Galaxy server which is preventing the download of the file via FTP. I'm
looking into options for that now.

Best,

Scott

On Tue, Dec 1, 2015 at 9:56 AM, Martin Čech <mar...@bx.psu.edu> wrote:

> Hello Scott,
>
> thanks to Marius van den Beek the first two issues should be fixed with
> this PR: https://github.com/galaxyproject/tools-devteam/pull/299
>
> These changes were already propagated to the Main Tool Shed.
> Note for tool developers: for future endeavours please use packages from
> the IUC repository (
> https://github.com/galaxyproject/tools-iuc/tree/master/packages)
>
> As of the timeout for the readline package it seems the problem was on the
> ftp.gnu side and it is now resolved.
> In the future Galaxy plans to use a smart caching proxy to handle&mirror
> all source codes required by the Tool Shed installations. This effort is
> lead by Eric Rasche and you can see it here
> https://github.com/galaxyproject/cargo-port
>
> Thank you for the report (and for using Galaxy :)).
>
> Martin
>
> On Mon, Nov 30, 2015 at 11:29 AM Scott Szakonyi <scott.b.szakony...@nd.edu>
> wrote:
>
>> Hi all,
>>
>> I'm installing the latest revision of Picard tools (efc56ee1ade4).
>> Picard installs successfully, and the tools are appearing in the
>> appropriate menu, but several packages that install with Picard are
>> reporting dependency issues, and I'm concerned that not all the tools will
>> work appropriately. The tools reporting issues are:
>>
>>    - package_cairo_1_12_14 (last lines of long warning/error sequence)
>>    -
>>       
>> /vectorbase/web/Galaxy/galaxy-dist/dependency_dir/libpng/1.6.7/devteam/package_libpng_1_6_7/f48b920cae1f/lib:
>>  file not recognized: Is a directory
>>       collect2: ld returned 1 exit status
>>       make[3]: *** [libcairo.la] Error 1
>>       make[2]: *** [all] Error 2
>>       make[1]: *** [all-recursive] Error 1
>>       make: *** [all] Error 2
>>       - package_pixman_0_32_4
>>    -
>>       /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In 
>> function `_start':
>>       (.text+0x20): undefined reference to `main'
>>       collect2: ld returned 1 exit status
>>       make[2]: *** [clip-test] Error 1
>>       make[1]: *** [all-recursive] Error 1
>>       make: *** [all] Error 2
>>    - package_readline_6_2
>>    - Error downloading from URL
>>       ftp://ftp.gnu.org/gnu/readline/readline-6.2.tar.gz:
>>       <urlopen error ftp error: [Errno 110] Connection timed out>
>>
>> Is anyone else having issues with these packages? Any suggestions for
>> resolving these problems?
>>
>> Thanks!
>>
>> --
>> Scott B. Szakonyi
>> Research Programmer
>>
>> *Center for Research Computing*
>> 107 Information Technology Center
>> Notre Dame, IN 46556
>> http://crc.nd.edu
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>   https://lists.galaxyproject.org/
>>
>> To search Galaxy mailing lists use the unified search at:
>>   http://galaxyproject.org/search/mailinglists/
>
>


-- 
Scott B. Szakonyi
Research Programmer

*Center for Research Computing*
107 Information Technology Center
Notre Dame, IN 46556
http://crc.nd.edu
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to