Hi all
Unfortunately I was unable to find this in the documentation or find a
working example.
In my tool definition I have inputs and outputs like this:
<param name="input_vcfs" type="data" multiple="true" format="vcf"
label="Input VCF file(s)" />
<outputs>
<data format="fasta" name="output" label="${tool.name} on
${on_string}: FASTA file" />
</outputs>
I would like to define a test which takes two vcfs from the "input_vcfs"
parameter. Is this correct?
<tests>
<test>
<param name="input_vcfs" value="1_short.vcf" ftype="vcf" />
<param name="input_vcfs" value="2_short.vcf" ftype="vcf" />
<output name="output" file="testresult.fa" ftype="fasta" />
</test>
</tests>
or option 2?
<tests>
<test>
<param name="input_vcfs" value="1_short.vcf,2_short.vcf" ftype="vcf" />
<output name="output" file="testresult.fa" ftype="fasta" />
</test>
</tests>
or something else entirely?
Thanks for your help
Ulf
--
Ulf Schaefer, PhD
Bioinformatics Scientist
Bioinformatics Unit - Infectious Disease Informatics
National Infection Service
Public Health England
[email protected]
http://www.gov.uk/phe
Protecting and improving the nation’s health
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