FWIW, there is an existing bedstrict and bed12 (and bed6) datatypes in Galaxy.
The strict datatypes are currently usually created by implicit datatype
converters and are most often used by some external display applications that
need standards conforming files. bed6/12 are subclasses of bedstrict. They can
of course be consumed or created by any sort of tool. Please let us know if we
can provide additional information.
Thanks for using Galaxy,
On Jan 14, 2016, at 4:26 PM, Lance Parsons <lpars...@princeton.edu> wrote:
> Does anyone know of any efforts to create a BED12 datatype for Galaxy? Since
> some tools require BED12 and the automatic convertion from GFF-to-BED does
> not seem to generate a BED12, it seems it might be a worthwhile addition.
> If not, what would be the best way to go about doing this? Making it part of
> the core galaxy (which would allow multiple tools to share the same data type
> definitions) or making it part of a toolshed tool (which I'm not sure how to
> do)? BTW, I'm thinking about RSeQC at the moment, but I know other tools
> use/require this format.
> Lance Parsons - Scientific Programmer
> Carl C. Icahn Laboratory - Room 141 (Temporary)
> Lewis-Sigler Institute for Integrative Genomics
> Princeton University
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