Thanks for the quick response Marius and Bjoern, really appreciate the
help!

Since I need to make this work in the next day or so, would you be
interested in seeing what my script looks like Bjoern? I imagine it¹ll
only be a couple of lines though to do this.

Thanks again,
Cam

On 27/01/2016 7:17 pm, "Björn Grüning" <bjoern.gruen...@gmail.com> wrote:

>Hi Cam,
>
>as Marius already pointed out this is easily possible with bioblend.
>I would create a small script that takes the path to the GA file as
>input, preferably also a URL, and populates this in Galaxy.
>
>I would be interested to include such a script in the Main Docker
>container, so everyone can use this similar to the script for installing
>tools.
>
>A second option would be to upload the workflow with all dependencies to
>the TS and than simply install the workflow.
>
>Similar to this one:
>
>https://github.com/bgruening/galaxytools/tree/master/workflows/ncbi_blast_
>plus/find_three_genes_located_nearby
>
>Hope this helps,
>Bjoern
>
>Am 27.01.2016 um 03:14 schrieb Cameron Jack:
>> Hi all,
>> 
>> 
>> I've been developing a Dockerfile and repositories to enable users to
>> set up an NGS forensics pipeline. So far so good, I can build the image
>> (based on Bjoern Gruening's excellent galaxy-stable Docker image) and
>> incorporate all the various tools I need, including custom ones with
>> custom interfaces. I've also built some workflows within a running image
>> and exported them to .ga files, but now I'm wondering if there is a way
>> to import those back in to a new image via the Dockerfile? I'd rather
>> have everything set up for the users upon building the image, rather
>> than logging in as admin and then importing the workflow. Is this
>> possible? If so, how?
>> 
>> 
>> Thanks for any and all answers.
>> 
>> 
>> Best regards,
>> 
>> Cam
>> 
>> 
>> Cameron Jack
>> 
>> Bioinformatician
>> ANU Bioinformatics Consulting Unit
>> The Australian National University
>> 
>> The John Curtin School of Medical Research
>> Building 131 Garran Road
>> Acton 0200, ACT
>> 
>> Ph (office): +61 2 612 51128
>> Ph (mobile): +61 4 2368 0745
>> Email: cameron.j...@anu.edu.au
>> Group email: a...@anu.edu.au
>> 
>> 
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