Re: [galaxy-dev] Filtering dynamic options in tool with tagset

[Hans-Rudolf Hotz]

On 01/27/2016 10:29 AM, Matthias De Smet wrote:

Hi Hans-Rudolf

Thanks again, you’re a lifesaver!
Any suggestions on how I could eliminate the <code> tag, as the wiki states 
it’s deprecated?

well, it has been 'deprecated' for many years now.....

I checked out <actions> but don’t see a straightforward wau to get the same 
results.

same for me  :(


Hans-Rudolf

Matthias

Op 27 jan. 2016, om 10:20 heeft Hans-Rudolf Hotz <h...@fmi.ch> het volgende 
geschreven:

Hi Matthias

I don't think you can do that...I would delegate the filtering to the 
'list_files' function, i.e. by calling:

list_files(archive_source,query)


Regards, Hans-Rudolf


On 01/27/2016 10:07 AM, Matthias De Smet wrote:

Hi All,

I’m trying to implement a tool that get a list of options through the 
“dynamic_options” tag. I try to filter the options that get returned with 
another param, but it doensn’t seem to work.

my tool xml looks like this

<tool id="archivetolibrary" name="Copy files" version="0.1.0">
   <description>from the archive to a data library</description>
   <code file="list_files.py"/>
   <command interpreter="bash">
     test.sh > $log
   </command>
   <inputs>
     <param name="archive_source" type="select" display="radio" label="Choose source 
archive">
       <options from_file="archives.loc">
         <column name="name" index="0"/>
         <column name="value" index="1"/>
       </options>
     </param>
     <param name="query" type="text" label="Search for files"/>
     <param name="selected_file" type="select" label="Choose your file" 
dynamic_options="list_files(archive_source)">
       <filter type="param_value" ref="query" column="0" />
     </param>
</inputs>
   <outputs>
     <data name="log" format="txt" label="${tool.name} on ${on_string}"></data>
  </outputs>
   <tests>
     <test>
     </test>
   </tests>
   <help>
   </help>
</tool>


Anyone with experience implementing filters? (Gx 15.10 on Ubuntu 14.04.3)

Thanks!
Matthias
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