Mattias, what does your supervisord config look like? Specifically, does it contain an environment variable to direct the Galaxy handler to the correct virtualenv?
Peter On 9 February 2016 at 16:03, Matthias De Smet <matthias.des...@ugent.be> wrote: > Hi all, > > > We were tracking the galaxy master branch on our local server and are > looking to migrate to v16.01. > The galaxy processes are managed bij supervisor as shown here ( > https://wiki.galaxyproject.org/Admin/Config/Performance/Scaling). > After updating all dependencies in our venv we tried to restart the server > but got the following issue: > > Loading paste environment: > config:/home/galaxy/galaxy-dist/config/galaxy.ini > Traceback (most recent call last): > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", > line 247, in loadapp > return loadobj(APP, uri, name=name, **kw) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", > line 271, in loadobj > global_conf=global_conf) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", > line 296, in loadcontext > global_conf=global_conf) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", > line 320, in _loadconfig > return loader.get_context(object_type, name, global_conf) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", > line 458, in get_context > section) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", > line 517, in _context_from_explicit > value = import_string(found_expr) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", > line 22, in import_string > return pkg_resources.EntryPoint.parse("x=" + s).load(False) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pkg_resources/__init__.py", > line 2380, in load > return self.resolve() > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pkg_resources/__init__.py", > line 2386, in resolve > module = __import__(self.module_name, fromlist=['__name__'], level=0) > File "lib/galaxy/web/buildapp.py", line 5, in <module> > from galaxy.webapps.galaxy.buildapp import app_factory > File "lib/galaxy/webapps/galaxy/buildapp.py", line 15, in <module> > import galaxy.app > File "lib/galaxy/app.py", line 9, in <module> > import galaxy.queues > File "lib/galaxy/queues.py", line 9, in <module> > from kombu import Exchange, Queue, Connection > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/kombu/__init__.py", > line 67, in __getattr__ > module = __import__(object_origins[name], None, None, [name]) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/kombu/entity.py", > line 10, in <module> > from .abstract import MaybeChannelBound, Object > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/kombu/abstract.py", > line 12, in <module> > from .connection import maybe_channel > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/kombu/connection.py", > line 19, in <module> > from kombu import exceptions > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/kombu/exceptions.py", > line 12, in <module> > from amqp import ChannelError, ConnectionError, ResourceError > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/amqp/__init__.py", > line 34, in <module> > from .connection import Connection # noqa > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/amqp/connection.py", > line 40, in <module> > from .transport import create_transport > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/amqp/transport.py", > line 21, in <module> > import ssl > File "/Shared/Software/Cellar/python/2.7.11/lib/python2.7/ssl.py", line > 97, in <module> > import _ssl # if we can't import it, let the error > propagate > ImportError: > /home/galaxy/galaxy-dist/.venv/lib/python2.7/lib-dynload/_ssl.so: undefined > symbol: SSL_CTX_set_alpn_protos > > So far we have tried: > - rebuilding the venv > - reinstalling python > > Funny thing is, when we start the configuration with the “run.sh” script > instead of through supervisor everything seems to work just fine. > > We’re at a loss, please help! > Thanks! > Matthias > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
