Hi Hans-Rudolf, Actually, I'm also feeling a little "old-fashioned" myself and would prefer to edit .loc files, especially given the amount of documentation out there. I know Data Managers are a next step up, but I don't think I'm smart enough to figure out why I was getting a blank page -- perhaps a problem for another day (that I might ignore unless it bothers users :-) ).
By the way, I just got it working -- thank you for your help! Ray On Thu, Feb 18, 2016 at 4:10 PM, Hans-Rudolf Hotz <h...@fmi.ch> wrote: > Hi Ray > > Well, I guess, you can call me 'old-fashioned' ;) > > we still solely rely on manually editing the '*loc' files. The main reason > we do that: Most of our reference data is first prepared (by others) for > people using it on the command line, and only in a second step we make it > available via Galaxy. > > Hans-Rudolf > > > > On 02/18/2016 09:00 AM, Raymond Wan wrote: >> >> Hi Hans-Rudolf, >> >> Thank you for getting back to me! >> >> I did take a peak at those files and they seem self-explanatory. I >> think I can do that. However, I was worried about the message at the >> top of: >> >> https://wiki.galaxyproject.org/Admin/DataPreparation >> >> It seemed the method written on that page has now been superseded by >> Data Managers? I was worried editing *.loc files directly with an >> editor would break a database and cause more headaches for me. Is >> that not the case or perhaps I can get away with doing it just for the >> FASTA files but should still use Data Managers for index generation? >> >> Thank you! >> >> Ray >> >> >> On Thu, Feb 18, 2016 at 3:54 PM, Hans-Rudolf Hotz <h...@fmi.ch> wrote: >>> >>> Hi Ray >>> >>> If you already have the reference data (as you have written in your first >>> e-mail), then I suggest you manually add those files (file paths) to >>> >>> ~/tool-data/bowtie2_indices.loc >>> ~/tool-data/bowtie_indices.loc >>> >>> This way you prevent duplication of your reference data >>> >>> >>> Regards, Hans-Rudolf >>> >>> ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/