Hi Christian, all this functionality is available either in the picard tools or in the samtools collection. bam_filter is also available and based on bam_utils. There is also a suite of bam-tools. So many tools to choose from :)
Hope this helps, Bjoern Am 26.02.2016 um 17:35 schrieb Christian Brenninkmeijer: > Hi All, > > Has anyone written galaxy tools for the samtools view functions such as > > samtools view -f 0x0002 -F 0x0100 -uo > > and/or > > samtools view -uSo > > Thanks > Christian > University of Manchester > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
