Hi,
Does this method is still valid :
https://wiki.galaxyproject.org/Admin/Config/Performance/Purge%20Histories%20and%20Datasets
?
Here is what I used (not anymore; in a cron):
&<---------------------------------------------&<
#!/bin/bash
# purge galaxy datasets, histories, folders, libraires
# not updated since $day
day=$1
GALAXY_HOME="/home/galaxy/galaxyapp"
cd $GALAXY_HOME
/usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py
universe_wsgi.ini -d $day -1
/usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py
universe_wsgi.ini -d $day -2 -r
/usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py
universe_wsgi.ini -d $day -3 -r
/usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py
universe_wsgi.ini -d $day -5 -r
/usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py
universe_wsgi.ini -d $day -4 -r
/usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py
universe_wsgi.ini -d $day -6 -r
#/usr/bin/find $GALAXY_HOME/tmp/ -mtime +30 -exec rm -rf "{}" \;
#/usr/bin/find $GALAXY_HOME/IOs/ -mtime +30 -exec rm -rf "{}" \;
#/usr/bin/find $GALAXY_HOME/job_working_directory/ -mtime +30 -exec rm -rf
"{}" \;
&<---------------------------------------------&<
Best,
Remy
2016-03-01 15:55 GMT+01:00 Nicola Soranzo <nsora...@tiscali.it>:
> You can use tmpwatch on RedHat/CentOS/Fedora or tmpreaper on Debian/Ubuntu.
>
> Cheers,
> Nicola
>
>
> On 01/03/16 14:30, Raphenya, Amogelang wrote:
>
> Is there a script that is used to clean up database/tmp
>
>
> *Amos Raphenya *
> *Bioinformatics Software Developer*
> *Department of Biochemistry & Biomedical Sciences*
> *McMaster University, MDCL **2317*
> *p: (905) 525-9140 **ext: **22787*
> *a: 1280 Main St W.,Hamilton, Ontario, Canada L8S 4K1*
> *e: <raphe...@mcmaster.ca>raphe...@mcmaster.ca <raphe...@mcmaster.ca> *
> *skype: amos_raphenya*
>
> On Feb 29, 2016, at 10:21 AM, Björn Grüning < <bjoern.gruen...@gmail.com>
> bjoern.gruen...@gmail.com> wrote:
>
> Hi,
>
> if you are not overwriting this value with a object_store setting, it
> defaults to 'database/tmp' as written in galaxy.ini. The values are the
> default values which you see.
>
> Ciao,
> Bjoern
>
> Am 29.02.2016 um 16:19 schrieb Raphenya, Amogelang:
>
> Hi All,
>
> Where are the temporary files stored if the line below is commented out?
>
> |# Temporary files are stored in this directory. new_file_path =
> database/tmp|
>
>
> Thank you.
>
> /
> /
> /*Amos Raphenya* /
> /Bioinformatics Software Developer/
> /Department of Biochemistry & Biomedical Sciences/
> /McMaster University, MDCL //2317/
> /p: (905) 525-9140 //ext: //22787/
> /a: 1280 Main St W.,Hamilton, Ontario, Canada L8S 4K1/
> /e: raphe...@mcmaster.ca <mailto:raphe...@mcmaster.ca
> <raphe...@mcmaster.ca>> /
> /skype: amos_raphenya/
>
>
>
>
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___________________________________________________________
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