I'm trying to setup a dynamic job destination for bowtie2 so that it submits to a different destination if the `-a` option is set or the `-k` option is set to a high value. I've got things working, but the function I've written seems rather complicated and ugly. I was wondering if anyone had any advice on a better way to query job parameters. See the function here:


Thanks in advance for any suggestions or comments.

Lance Parsons - Scientific Programmer
Carl C. Icahn Laboratory - Room 136
Lewis-Sigler Institute for Integrative Genomics
Princeton University

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