We've got the collectl based metric collection stuff working and that dumps
data in the Galaxy DB (which you can pull out using the API).
On 17 March 2016 at 10:45, Dooley, Damion <damion.doo...@bccdc.ca> wrote:
> If you are looking for a simple python program to log cpu% and memory of
> another executable, then analyze.py might do. Its in
> -case along with a few scripts that show examples of its use.
> >> On 02/21/2016 11:13 PM, Peter van Heusden wrote:
> >> Hi there
> >> We're researching the resource (CPU time and memory) requirements for
> >> STAR at the moment. Specifically, we'd like to build up a database of
> >> size to resource usage so that we can use this to feed a dynamic
> >> destination mapper (currently our STAR configuration uses a thumbsuck
> >> RAM and CPU requirements that is not optimal but works in many cases).
> >> Has anyone collected these metrics before? And more generally, is anyone
> >> collecting metrics for a range of bioinformatics tools? A database like
> >> this could be very useful!
> >> Thanks!
> >> Peter
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