Hi Marius,

Now I ran in to some problems.

When trying to change metadata of a file, the python path changes (these
tools run using drmaa) to the normal system version. Here tools are ending
in error becaus sqlalchemy.orm cannot be found. I can ofcourse install
sqlarchemy-python systemwide. But this woudn't make me very happy.

in File: <galaxy>/lib/galaxy_ext/metadata/set_metadata.py
a sys.path.insert to .venv/lib should be added. I don't know what the right
plcae for this is.

Do you hava any better ideas for this matter?

Eric




On 8 April 2016 at 16:15, Eric Kuyt <eric.ku...@wur.nl> wrote:

> ​Thanks, works like a charm!​ Clean easy fix, Now why I couldn't come up
> with this myself.
>
> On 2 April 2016 at 11:49, Marius van den Beek <m.vandenb...@gmail.com>
> wrote:
>
>> ld have been mentioned with the release notes.
>> I didn't test this, but it might be sufficient to replace
>> PYTHON="/usr/bin/python"
>> with PYTHON="<path/to/venv/bin/python>".
>> If that is sufficient for you, let us know and we will update the wiki
>> and adjust the script in
>>
>
>
>
>
> --
> Central Veterinary Institute of Wageningen UR (CVI)
> Department of Infection Biology
> PO box 65, 8200 AB Lelystad, NL
> Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad
>
> Tel:  +31-(0)320-293391
> Fax: +31-(0)320-238153
> E-mail: eric.ku...@wur.nl
> Web: http://www.cvi.wur.nl
>



-- 
Central Veterinary Institute of Wageningen UR (CVI)
Department of Infection Biology
PO box 65, 8200 AB Lelystad, NL
Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad

Tel:  +31-(0)320-293391
Fax: +31-(0)320-238153
E-mail: eric.ku...@wur.nl
Web: http://www.cvi.wur.nl
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