Hi Marius, Now I ran in to some problems.
When trying to change metadata of a file, the python path changes (these tools run using drmaa) to the normal system version. Here tools are ending in error becaus sqlalchemy.orm cannot be found. I can ofcourse install sqlarchemy-python systemwide. But this woudn't make me very happy. in File: <galaxy>/lib/galaxy_ext/metadata/set_metadata.py a sys.path.insert to .venv/lib should be added. I don't know what the right plcae for this is. Do you hava any better ideas for this matter? Eric On 8 April 2016 at 16:15, Eric Kuyt <eric.ku...@wur.nl> wrote: > Thanks, works like a charm! Clean easy fix, Now why I couldn't come up > with this myself. > > On 2 April 2016 at 11:49, Marius van den Beek <m.vandenb...@gmail.com> > wrote: > >> ld have been mentioned with the release notes. >> I didn't test this, but it might be sufficient to replace >> PYTHON="/usr/bin/python" >> with PYTHON="<path/to/venv/bin/python>". >> If that is sufficient for you, let us know and we will update the wiki >> and adjust the script in >> > > > > > -- > Central Veterinary Institute of Wageningen UR (CVI) > Department of Infection Biology > PO box 65, 8200 AB Lelystad, NL > Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad > > Tel: +31-(0)320-293391 > Fax: +31-(0)320-238153 > E-mail: eric.ku...@wur.nl > Web: http://www.cvi.wur.nl > -- Central Veterinary Institute of Wageningen UR (CVI) Department of Infection Biology PO box 65, 8200 AB Lelystad, NL Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad Tel: +31-(0)320-293391 Fax: +31-(0)320-238153 E-mail: eric.ku...@wur.nl Web: http://www.cvi.wur.nl
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