Hi Tiziano, I think you are correct in your assumption. If you do not need to have uploads run on pulsar, you should be able to specify a local destination for uploads (the upload tool id is upload1) in your job_conf.xml. There are some examples described here: https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L496 If you can place a copy of galaxy and a virtualenv on your pulsar server, you could also set this up as in https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L379
Note that I haven't tried this yet, but I think this is a good start. Let us know if that works. Cheers, Marius On 9 May 2016 at 10:42, Tiziano Flati <[email protected]> wrote: > Hi all, > > I have succesfully setup a Galaxy-Pulsar architecture and I am able to run > jobs over datasets* already uploaded on a history*. > > When I try to upload a new file to the history, though, the upload job > fails with the following error: > > Traceback (most recent call last): >> File "/home/flati/pulsar/files/staging/80/tool_files/upload.py", line >> 18, in <module> >> import galaxy.model # noqa >> ImportError: No module named model > > > Note: in job_conf.xml, Pulsar is the default destination: > > <destinations default="win_pulsar"> > > > Does someone know what the problem is? > I suspect that setting pulsar as the default destination causes the upload > tool to run on Pulsar's side which, however, does not have access to > Galaxy's lib directory (which contains the galaxy model module). > > Any help is very appreciated, > Tiziano > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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