I've just started learning qiime, so probably not the best person to write
tests / do clean up at the moment. Galaxy tool would have made my life much
easier, by way of figuring out this beast :).
> afaik a few more tests would be nice:
> But it looks more a less good.
> If you want to do the final cleanup, this PR is probably ready to merge.
> P.S. CC Bérénice as she was working on it as well
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