Hi all

It turns out that when the gfortran package is installed, it happily 
uses the pre-compiled binaries. If it cannot be found it tries to 
compile it unsuccessfully.

Thanks
Ulf



On 01/06/16 13:49, Olivier CLAUDE wrote:
> Hi Ulf,
>
> I did not notified natefoo, since I make it work.
>
> I do not remember clearly how I managed to solve this problem. But I think 
> that I installed it manually through two ways :
> I installed in linux via synaptic, and then retried in galaxy. Now it is 
> working fine but I can't remember if this was sufficient to make it work or 
> not.
> At the beginning I was on a 32bit machine and I switched to a 64 bits since 
> some tools weren't able to run with 32bits.
> Everything then is based on x86_64.
>
>
> Good luck,
>
> Olivier
>
>
> -----Message d'origine-----
> De : Ulf Schaefer [mailto:ulf.schae...@phe.gov.uk]
> Envoyé : mercredi 1 juin 2016 11:50
> À : Olivier CLAUDE <o.cla...@outlook.fr>; 'Peter Cock' 
> <p.j.a.c...@googlemail.com>; nsora...@tiscali.it
> Cc : galaxy-dev@lists.galaxyproject.org
> Objet : Re: [galaxy-dev] atlas 3.10 IUC error
>
> Hi all
>
> Sorry to be resuscitating this old thread, but has anyone looked at it, or 
> has an issue been created on Github, notifying @natefoo?
>
> I am running into the same issue, only the machine that the compile from 
> source fails on actually is x86_64. So I am not sure why it is not using the 
> pre-compiled binaries.
>
> On another x86_64 machine the install works fine with the pre-compiled 
> binaries.
>
> Thanks very much
> Ulf
>
> On 04/11/15 08:26, Olivier CLAUDE wrote:
>> Thanks Peter, Nicola,
>>
>> Ok, I'll try to switch on an 64bits computer then, maybe there's some other 
>> errors due to this.
>> Thanks a lot.
>>
>> Olivier
>>
>> -----Message d'origine-----
>> De : Peter Cock [mailto:p.j.a.c...@googlemail.com]
>> Envoyé : mardi 3 novembre 2015 19:24
>> À : o.cla...@outlook.fr
>> Cc : Nicola Soranzo <nsora...@tiscali.it>;
>> galaxy-dev@lists.galaxyproject.org
>> Objet : Re: [galaxy-dev] atlas 3.10 IUC error
>>
>> On Tue, Nov 3, 2015 at 6:16 PM,  <o.cla...@outlook.fr> wrote:
>>> Hi Nicola
>>>
>>> It is an i686. Is it a problem ?
>>>
>>> Cheers,
>>> Olivier
>>
>> Currently only for 64bit Linux are pre-compiled binaries used:
>>
>> https://github.com/galaxyproject/tools-iuc/blob/master/packages/packag
>> e_atlas_3_10/tool_dependencies.xml
>>
>> There's a special case for Mac, but otherwise the current Atlas recipe would 
>> attempt to compile from source for 32bit Linux. And that is failing for some 
>> reason...
>>
>> The easiest fix would be if pre-compiled binaries for 32bit Linux were 
>> available, we would need <actions os="linux" architecture="i386"> and/or 
>> <actions os="linux" architecture="i686"> actions, e.g.
>>
>> https://github.com/peterjc/galaxy_blast/blob/master/packages/package_b
>> last_plus_2_2_30/tool_dependencies.xml
>>
>> However, the compile from source recipe will need looking at...
>>
>> Peter
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>
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