I forgot to say that Galaxy installs those dependencies (tool_dependencies or conda) beside your host system. That will not interfere with your host libraries, binaries ...
Gildas ----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr <http://abims.sb-roscoff.fr/> Member of the Workflow4Metabolomics project http://workflow4metabolomics.org <http://workflow4metabolomics.org/> Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81 ------------------------------------------------------------------ > Le 27 juil. 2016 à 17:41, Gildas Le Corguillé <lecorgui...@sb-roscoff.fr> a > écrit : > > Hi Tony, > > Yes, Galaxy will install a whole functional python version. > At runtime, Galaxy source some env.sh files according to the different > requirements and the bunch of requirement dependencies. > > Using the tool_dependencies, indeed, Galaxy sets almost a dedicated > environment for the tools. > > The purpose is the same with the new system Conda. But in this case, Conda > can create environment natively > > I hope I answered to your question. > > Gildas > > ----------------------------------------------------------------- > Gildas Le Corguillé - Bioinformatician/Bioanalyste > > Plateform ABiMS (Analyses and Bioinformatics for Marine Science) > http://abims.sb-roscoff.fr <http://abims.sb-roscoff.fr/> > > Member of the Workflow4Metabolomics project > http://workflow4metabolomics.org <http://workflow4metabolomics.org/> > > Station Biologique de Roscoff - UPMC/CNRS - FR2424 > Place Georges Teissier 29680 Roscoff FRANCE > tel: +33 2 98 29 23 81 > ------------------------------------------------------------------ > > > >> Le 27 juil. 2016 à 17:16, Tony Schreiner <anthony.schrei...@bc.edu >> <mailto:anthony.schrei...@bc.edu>> a écrit : >> >> I have galaxy server 15.10 running on Ubuntu 14.04, which has python 2.7.5. >> >> I was in the process of adding matplotlib from the toolchest. It has a >> dependency on package_python_2_7. >> >> Before proceeding, I'd like to understand a bit how that works. Does that >> install a whole new python, and how then does it get invoked? >> >> Tony Schreiner >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ <https://lists.galaxyproject.org/> >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ >> <http://galaxyproject.org/search/mailinglists/> > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
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