since the recent update to 16.04 I get the following error when trying to
import a file from a user directory to a data library:
AssertionError: use_remote_user is set but HTTP_REMOTE_USER header was not
I use apache as a proxy and use an LDAP server for authentication. In order to
get the API to work previously the apache had to be set to not check
authentication for the requests to /api. In the logs I can see that the dataset
import is an request to the API, so since the auth is not checked then, there
is also no REMOTE_USER header set.
What is the recommended way to solve this issue with the current Galaxy
version? I disabled the special settings for /api and the dataset import works
I tried to check the API with an old test script based on bioblend, but I now
get the following error:
ConnectionError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed
(_ssl.c:645), 0 attempts left: None
Previously I could disable it with
but that doesn't seem to work anymore (switched to Python 3 now). Since
bioblend wraps all the requests methods, I cannot apply any of the common
solutions I found online (e.g. set verify=False).
Any help to solve these issues is highly appreciated :-).
HPC System Administrator
UNIVERSITÉ DU LUXEMBOURG
LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE
Campus Belval | Biotech II
6, avenue du Swing
T +352 46 66 44 5360
This message is confidential and may contain privileged information. It is
intended for the named recipient only. If you receive it in error please notify
me and permanently delete the original message and any copies.
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: