It only works when specifying the url like this (http + trailing slash) 
otherwise urljoin removes the subdir:
'http://server/subdir/'

and I use ephemeris

thank you very much,
ido

> On 30 Aug 2016, at 17:55, Marius van den Beek <m.vandenb...@gmail.com> wrote:
> 
> Hi Ido,
> 
> please use ephemeris, it’s as easy as it gets:
> pip install ephemeris
> shed-install -g <galaxy_url> -a <admin_key> -t <tool_list_file>.
> The install_tool_shed_tools.py is deprecated and will not work anymore.
> That said, we haven’t tested installing from toolshed on subdirectories, it’s 
> entirely possible that there is a problem.
> I will have a look and let you know.
> 
> Best,
> Marius
> 
> 
> On 30 August 2016 at 17:14, Tamir,Ido <ido.ta...@vbcf.ac.at> wrote:
> Hi,
> 
> a)
> short version:
> instead of:
> http://gecko.imp.univie.ac.at/galtools/api/repositories/get_ordered_installable_revisions?owner=itme&name=shrnaseqw
> 
> the tool makes a request to:
> http://gecko.imp.univie.ac.at/api/repositories/get_ordered_installable_revisions?owner=itme&name=shrnaseqw
> 
> (i.e. galtools is missing)
> 
> 
> 
> 
> b)
> long version:
> 
> my toolshed is running behind a proxy under:
> my.server/galtools
> 
> I use the script install_tool_shed_tools.py via galaxy-ansible-playbook (I 
> know of ephemeris but don’t know how to use it yet).
> 
> Installing tools from the default toolshed works, but when I try to access my 
> own tools I see in nxginx logs
> that the request from the script swallowed the “galtools” part.
> 
> But the url is stored correctly in json, and I can get the appropriate 
> response when I specify the url in a browser:
> 
> http://gecko.imp.univie.ac.at/galtools/api/repositories/get_ordered_installable_revisions?owner=itme&name=shrnaseqw
> 
> =>
> 
> ["f663fded0c69", "4aeaa49154f8"]
> 
> 
> thank you very much for your input,
> ido
> 
> 
> ansible log:
> ok: [localhost] => (item={u'owner': u'itme', u'tool_shed_url': 
> u'gecko.imp.univie.ac.at/galtools', u'tool_panel_section_id': u'ngs_rna', 
> u'name': u'shrnaseqw'}) => {"changed": false, "cmd": 
> ["/groups/vbcf-ngs/wfsys/galaxy/galaxy/.venv/bin/python", 
> "install_tool_shed_tools.py", "-y", "name: shrnaseqw\nowner: 
> itme\ntool_panel_section_id: ngs_rna\ntool_shed_url: 
> gecko.imp.univie.ac.at/galtools\n", "-a", "7e7c8ec27a0a99acee883d2beea8a60b", 
> "-g", "http://127.0.0.1:9098/";], "delta": "0:00:00.820941", "end": 
> "2016-08-30 16:55:58.869977", "failed": false, "failed_when_result": false, 
> "invocation": {"module_args": {"_raw_params": 
> "/groups/vbcf-ngs/wfsys/galaxy/galaxy/.venv/bin/python 
> install_tool_shed_tools.py -y \"name: shrnaseqw\nowner: 
> itme\ntool_panel_section_id: ngs_rna\ntool_shed_url: 
> gecko.imp.univie.ac.at/galtools\n\" -a 7e7c8ec27a0a99acee883d2beea8a60b -g 
> http://127.0.0.1:9098/";, "_uses_shell": false, "chdir": 
> "/groups/vbcf-ngs/wfsys/galaxy/galaxy", "creates": null, "executable": null, 
> "removes": null, "warn": true}, "module_name": "command"}, "item": {"name": 
> "shrnaseqw", "owner": "itme", "tool_panel_section_id": "ngs_rna", 
> "tool_shed_url": "gecko.imp.univie.ac.at/galtools"}, "rc": 1, "start": 
> "2016-08-30 16:55:58.049036", "stderr": "Traceback (most recent call last):\n 
>  File \"install_tool_shed_tools.py\", line 652, in <module>\n    
> install_tools(options)\n  File \"install_tool_shed_tools.py\", line 590, in 
> install_tools\n    (tool['name'], tool['owner'])[-1])\n  File 
> \"/groups/vbcf-ngs/wfsys/galaxy/galaxy/.venv/lib/python2.7/site-packages/bioblend/toolshed/repositories/__init__.py\",
>  line 147, in get_ordered_installable_revisions\n    r = Client._get(self, 
> url=url, params=params)\n  File 
> \"/groups/vbcf-ngs/wfsys/galaxy/galaxy/.venv/lib/python2.7/site-packages/bioblend/galaxy/client.py\",
>  line 147, in _get\n    raise 
> ConnectionError(msg)\nbioblend.galaxy.client.ConnectionError: GET: error 404: 
> '<html>\\r\\n<head><title>404 Not Found</title></head>\\r\\n<body 
> bgcolor=\"white\">\\r\\n<center><h1>404 Not 
> Found</h1></center>\\r\\n<hr><center>nginx/1.2.1</center>\\r\\n</body>\\r\\n</html>\\r\\n',
>  0 attempts left: None", "stdout": "", "stdout_lines": [], "warnings": []}
> 
> nginx:
> ==> error.log <==
> 2016/08/30 16:47:54 [error] 833#0: *442173 open() 
> "/etc/nginx/html/api/repositories/get_ordered_installable_revisions" failed 
> (2: No such file or directory), client: 10.42.160.35, server: gecko, request: 
> "GET 
> /api/repositories/get_ordered_installable_revisions?owner=itme&name=shrnaseqw 
> HTTP/1.1", host: "gecko.imp.univie.ac.at"
> 
> ==> access.log <==
> 10.42.160.35 - - [30/Aug/2016:16:47:54 +0200] "GET 
> /api/repositories/get_ordered_installable_revisions?owner=itme&name=shrnaseqw 
> HTTP/1.1" 404 142 "-" "python-requests/2.8.1”
> 
> … this is how it should be:
> 
> 10.42.160.51 - - [30/Aug/2016:16:52:54 +0200] "GET 
> /galtools/api/repositories/get_ordered_installable_revisions?owner=itme&name=shrnaseqw
>  HTTP/1.1" 200 43 "-" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.11; rv:48.0) 
> Gecko/20100101 Firefox/48.0"
> 
> 
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