Hi,
I'm trying to upload a file to a new galaxy instance for the first time,
however an error happened, which never did in the past:
Traceback (most recent call last):
File "/media/libraryfiles/galaxy/lib/galaxy/jobs/runners/__init__.py",
line 170, in prepare_job
job_wrapper.prepare()
File "/media/libraryfiles/galaxy/lib/galaxy/jobs/__init__.py", line
893, in prepare
tool_evaluator.set_compute_environment( compute_environment,
get_special=get_special )
File "/media/libraryfiles/galaxy/lib/galaxy/tools/evaluation.py",
line 63, in set_compute_environment
visit_input_values( self.tool.inputs, incoming, validate_inputs )
File "/media/libraryfiles/galaxy/lib/galaxy/tools/parameters/__init__.py",
line 92, in visit_input_values
visit_input_values( input.inputs, d, callback, new_name_prefix,
new_label_prefix, parent_prefix=new_name_prefix, **payload )
File "/media/libraryfiles/galaxy/lib/galaxy/tools/parameters/__init__.py",
line 110, in visit_input_values
callback_helper( input, input_values, name_prefix, label_prefix,
parent_prefix=parent_prefix, context=context )
File "/media/libraryfiles/galaxy/lib/galaxy/tools/parameters/__init__.py",
line 75, in callback_helper
new_value = callback( **args )
File "/media/libraryfiles/galaxy/lib/galaxy/tools/evaluation.py",
line 62, in validate_inputs
input.validate( value, request_context )
File "/media/libraryfiles/galaxy/lib/galaxy/tools/parameters/basic.py",
line 198, in validate
validator.validate( value, trans )
File "/media/libraryfiles/galaxy/lib/galaxy/tools/parameters/validation.py",
line 99, in validate
raise ValueError( message )
ValueError: You will need to reselect the file you specified
(/media/8tb/galaxy-data-store/database/tmp/upload_file_data_5wWKi5).
It looks those files were successfuly uploaded, but the dataset files are
all empty.
Has anyone seen this?
Thanks,
Rui
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