Are your libX* libraries and headers the same version?

On Mon, Oct 31, 2016 at 10:17 AM, evan clark <eclar...@fau.edu> wrote:

> All LibX are installed
>
> freetype/src/base/ftrfork.c:407:3: warning: no previous prototype for
> \u2018ft_raccess_rule_by_darwin_vfs\u2019 [-Wmissing-prototypes]
>    ft_raccess_rule_by_darwin_vfs( FT_Library  library,
>    ^
> freetype/src/psaux/afmparse.c:563:3: warning: no previous prototype for
> \u2018afm_parser_read_int\u2019 [-Wmissing-prototypes]
>    afm_parser_read_int( AFM_Parser  parser,
>    ^
> freetype/src/raster/ftraster.c:3244:3: warning: no previous prototype for
> \u2018Render_Glyph\u2019 [-Wmissing-prototypes]
>    Render_Glyph( RAS_ARG )
>    ^
> freetype/src/raster/ftraster.c:3392:3: warning: no previous prototype for
> \u2018Render_Gray_Glyph\u2019 [-Wmissing-prototypes]
>    Render_Gray_Glyph( RAS_ARG )
>    ^
> freetype/src/type1/t1load.c:230:3: warning: no previous prototype for
> \u2018mm_axis_unmap\u2019 [-Wmissing-prototypes]
>    mm_axis_unmap( PS_DesignMap  axismap,
>    ^
> freetype/src/type1/t1load.c:266:3: warning: no previous prototype for
> \u2018mm_weights_unmap\u2019 [-Wmissing-prototypes]
>    mm_weights_unmap( FT_Fixed*  weights,
>    ^
> freetype/src/type1/t1gload.c:58:3: warning: no previous prototype for
> \u2018T1_Parse_Glyph_And_Get_Char_String\u2019 [-Wmissing-prototypes]
>    T1_Parse_Glyph_And_Get_Char_String( T1_Decoder  decoder,
>    ^
> ./base/gxcmap.c: In function \u2018cmap_cmyk_direct\u2019:
> ./base/gxcmap.c:936:9: warning: variable \u2018code\u2019 set but not used
> [-Wunused-but-set-variable]
>      int code;
>          ^
> ./base/gxcmap.c: In function \u2018cmap_separation_direct\u2019:
> ./base/gxcmap.c:1185:9: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>      int code;
>          ^
> ./base/gxcmap.c: In function \u2018devicen_icc_cmyk\u2019:
> ./base/gxcmap.c:1305:9: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>      int code;
>          ^
> ./base/gxcmap.c: In function \u2018cmap_devicen_halftoned\u2019:
> ./base/gxcmap.c:1356:9: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>      int code;
>          ^
> ./base/gxcmap.c: In function \u2018cmap_devicen_direct\u2019:
> ./base/gxcmap.c:1402:9: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>      int code;
>          ^
> ./base/gxcmap.c: In function \u2018gx_device_uses_std_cmap_procs\u2019:
> ./base/gxcmap.c:1984:9: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>      int code;
>          ^
> ./base/gxdcolor.c: In function \u2018gx_dc_devn_write\u2019:
> ./base/gxdcolor.c:627:9: warning: unused variable \u2018k\u2019
> [-Wunused-variable]
>      int k;
>          ^
> ./base/gxht_thresh.c: In function \u2018gx_ht_threshold_
> landscape_sub\u2019:
> ./base/gxht_thresh.c:400:5: warning: \u2018align\u2019 attribute directive
> ignored [-Wattributes]
>      __align16 byte contone[LAND_BITS];
>      ^
> ./base/gxht_thresh.c: In function \u2018gx_ht_threshold_landscape\u2019:
> ./base/gxht_thresh.c:491:5: warning: \u2018align\u2019 attribute directive
> ignored [-Wattributes]
>      __align16 byte contone[LAND_BITS];
>      ^
> ./base/gxht_thresh.c: In function \u2018gxht_thresh_image_init\u2019:
> ./base/gxht_thresh.c:578:15: warning: variable \u2018oy\u2019 set but not
> used [-Wunused-but-set-variable]
>      fixed ox, oy;
>                ^
> ./base/gximono.c: In function \u2018image_render_mono_ht\u2019:
> ./base/gximono.c:1103:10: warning: \u2018xrun\u2019 may be used
> uninitialized in this function [-Wmaybe-uninitialized]
>      code = gxht_thresh_planes(penum, xrun, dest_width, dest_height,
>           ^
> ./base/gxi12bit.c: In function \u2018gs_image_class_2_fracs\u2019:
> ./base/gxi12bit.c:147:17: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>              int code;
>                  ^
> ./base/gxi12bit.c: In function \u2018image_render_icc16\u2019:
> ./base/gxi12bit.c:596:27: warning: variable \u2018pcs\u2019 set but not
> used [-Wunused-but-set-variable]
>      const gs_color_space *pcs;
>                            ^
> ./base/gxiscale.c: In function \u2018gs_image_class_0_interpolate\u2019:
> ./base/gxiscale.c:86:9: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>      int code;
>          ^
> ./base/gxiscale.c: In function \u2018initial_decode\u2019:
> ./base/gxiscale.c:444:19: warning: variable \u2018index_space\u2019 set
> but not used [-Wunused-but-set-variable]
>      unsigned char index_space;
>                    ^
> ./base/gxiscale.c:443:25: warning: unused variable \u2018w\u2019
> [-Wunused-variable]
>      stream_cursor_write w;
>                          ^
> ./base/gxiscale.c:441:28: warning: unused variable \u2018lop\u2019
> [-Wunused-variable]
>      gs_logical_operation_t lop = penum->log_op;
>                             ^
> ./base/gxiscale.c:439:28: warning: unused variable \u2018pis\u2019
> [-Wunused-variable]
>      const gs_imager_state *pis = penum->pis;
>                             ^
> ./base/gxiscale.c: In function \u2018image_render_interpolate_icc\u2019:
> ./base/gxiscale.c:907:70: warning: suggest parentheses around
> \u2018&&\u2019 within \u2018||\u2019 [-Wparentheses]
>      need_decode = !((penum->device_color || penum->icc_setup.is_lab) &&
>                                                                       ^
> ./base/gxiscale.c:934:13: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>          int code;
>              ^
> ./base/gxiscale.c: In function \u2018image_render_
> interpolate_landscape_icc\u2019:
> ./base/gxiscale.c:1351:70: warning: suggest parentheses around
> \u2018&&\u2019 within \u2018||\u2019 [-Wparentheses]
>      need_decode = !((penum->device_color || penum->icc_setup.is_lab) &&
>                                                                       ^
> ./base/gxiscale.c:1378:13: warning: variable \u2018code\u2019 set but not
> used [-Wunused-but-set-variable]
>          int code;
>              ^
> ./base/gdevdbit.c: In function \u2018gx_default_copy_alpha_hl_color\u2019:
> ./base/gdevdbit.c:203:11: warning: variable \u2018end_ptr\u2019 set but
> not used [-Wunused-but-set-variable]
>      byte *end_ptr;
>            ^
> In file included from ./base/gdevddrw.c:401:0:
> ./base/gxdtfill.h: In function \u2018gx_fill_trapezoid_ns_lc\u2019:
> ./base/gxdtfill.h:146:13: warning: variable \u2018ry\u2019 set but not
> used [-Wunused-but-set-variable]
>          int ry;
>              ^
> In file included from ./base/gdevddrw.c:411:0:
> ./base/gxdtfill.h: In function \u2018gx_fill_trapezoid_as_lc\u2019:
> ./base/gxdtfill.h:146:13: warning: variable \u2018ry\u2019 set but not
> used [-Wunused-but-set-variable]
>          int ry;
>              ^
> ./base/gdevdrop.c: In function \u2018mem_default_strip_copy_rop\u2019:
> ./base/gdevdrop.c:832:14: warning: \u2018source_row_raster\u2019 may be
> used uninitialized in this function [-Wmaybe-uninitialized]
>          code = (*dev_proc(&mdev, strip_copy_rop))
>               ^
> ./base/gdevmr8n.c: In function \u2018mem_gray8_rgb24_strip_copy_rop\u2019:
> ./base/gdevmr8n.c:134:9: warning: case value \u2018204\u2019 not in
> enumerated type \u2018gs_rop3_t {aka enum <anonymous>}\u2019 [-Wswitch]
>          case rop3_S:
>          ^
> ./base/gdevmr8n.c:138:9: warning: case value \u2018240\u2019 not in
> enumerated type \u2018gs_rop3_t {aka enum <anonymous>}\u2019 [-Wswitch]
>          case rop3_T:
>          ^
> In file included from ./base/gp_unix.c:19:0:
> ./base/pipe_.h:41:1: warning: function declaration isn\u2019t a prototype
> [-Wstrict-prototypes]
>  extern FILE *popen( /* const char *, const char * */ );
>  ^
> ./base/mkromfs.c:211:1: warning: no previous prototype for
> \u2018lprintf_file_only\u2019 [-Wmissing-prototypes]
>  lprintf_file_only(FILE * f, const char *file)
>  ^
> ./obj/aux/gp_unifs.o: In function `gp_open_scratch_file_generic':
> gp_unifs.c:(.text+0x83): warning: the use of `mktemp' is dangerous, better
> use `mkstemp'
> /usr/lib/../lib64/libXext.so: undefined reference to `_XEatDataWords'
> collect2: error: ld returned 1 exit status
> make: *** [bin/gs] Error 1
>
> Nate Coraor <n...@bx.psu.edu>
> October 31, 2016 10:12 AM
> Hi Evan,
>
> Can you include the full error you're receiving?
>
> Thanks,
> --nate
>
>
> evan clark <eclar...@fau.edu>
> October 31, 2016 10:11 AM
> I was installing a tool from the galaxy toolshed and one of the
> dependencies was missing due to a bad link. I modified the install files to
> use the same version of the the software except from a local directory,
> however galaxy renders a large error when compiling. If I compile the
> source in the same location outside of galaxy it compiles and installs
> correctly. The specific package I am attempting to install is ghostscript
> for homer package.
>
>
>
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