Hey Katherine,

It happens in basic.py. The code tag is executed to generate select options
there. Look at:
https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/tools/parameters/basic.py#L778

Bye, Sam

On Mon, Nov 21, 2016 at 1:46 PM, Peter Cock <p.j.a.c...@googlemail.com>
wrote:

> Are you asking how Galaxy takes the user-entered parameters
> (requested in the tool XML file with <input> tags) and builds a
> command line string using the Cheetah-format template defined
> in the <command> tag?
>
> At least part of the answer to that is the ToolEvaluator object:
>
> https://github.com/galaxyproject/galaxy/blob/
> 71cea6604d43c5fe6215f5656462ba6c1af69bb6/lib/galaxy/tools/
> evaluation.py#L454
>
> Peter
>
> On Mon, Nov 21, 2016 at 6:37 PM, Katherine Beaulieu
> <katherine.beaulieu...@gmail.com> wrote:
> > Hi Everyone,
> > Does anyone know how execution of code files happens? Is there a function
> > somewhere that fills the parameters in?
> > Cheers,
> > Katherine
> >
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