there are 8 datatypes, 7 are tabular / text files, one is binary. The
binary format also shows up in the dropdown.
I can send you the datatype specification python code if you'd like, Im not
sure what you need to see.
On Mon, Dec 5, 2016 at 12:01 PM, Aysam Guerler <aysam.guer...@gmail.com>
> Thanks for the quick response. What is the set of datatypes you are
> specifying? It is possible that one of the specified datatypes can be
> implicitly converted to html and text e.g. a fasta file will be listed even
> if only tabular has been specifed as valid datatype. In other words, Galaxy
> will implicitly convert the fasta file to a tabular file and present it as
> a valid option in the select field.
> On Mon, Dec 5, 2016 at 11:48 AM, Cristel Thomas <cristel.tho...@gmail.com>
>> Hi Sam,
>> I'm not sure what tools have multiple datatypes as input on usegalaxy.org
>> (and my files are still waiting to be uploaded for some reasons.........)
>> I can give you more details though. Those are tools we developed for flow
>> cytometry with new datatypes. I wonder if the issue is with the fact that
>> we added datatypes and I didn't do it right, although again, we don't have
>> any issues running 16.01 with those datatypes.
>> What I found so far on our test instance is the following:
>> - the problem exists with all tools on the instance, not just the few
>> that are set to take in several datatypes.
>> - the files that appear in the selection drop-down are of several
>> datatypes. I thought it was limited to the new datatypes we have defined,
>> but .html, .ypnb and text files are picked up although interestingly .png
>> and .pdf don't show up.
>> - the problem disappears when I limit the datatypes back to one for the 3
>> tools that we had set as accepting several datatypes.
>> thanks for your help!
>> On Mon, Dec 5, 2016 at 10:29 AM, Aysam Guerler <aysam.guer...@gmail.com>
>>> Hey Cris,
>>> Thanks for reporting this. I am looking into it. In the meanwhile, I am
>>> wondering if you can reproduce the error on usegalaxy.org? Does it
>>> happen for all tools?
>>> On Mon, Dec 5, 2016 at 8:47 AM, Cristel Thomas <cristel.tho...@gmail.com
>>> > wrote:
>>>> Hi Galaxy Devs,
>>>> We have a few tools with multiple datatypes as input. They work fine in
>>>> 16.01. In 16.07 though, the selection of files in the tools' drop-downs
>>>> include every single file in the history, instead of just the files from
>>>> the specified data types.
>>>> Anyone else run into this? Any idea of what's going on?
>>>> Thanks much,
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