Hi Mohamed,
the lib/galaxy/auth/ folder is not new at all, there seems to be a problem in your config/auth_conf.xml , what do you have inside


<ldap-options> </ldap-options>

?

Cheers,
Nicola

On 24/02/17 08:56, Mohamed Kassam wrote:
Dear Gildas,

Thanks for your message.

So I 've tried and it recretaed a new .venv. I've checked the ldap python and it was succeffully installed : Installing collected packages: psycopg2, Pygments, WebError, python-ldap Successfully installed Pygments-2.0.2 WebError-0.10.3 psycopg2-2.6.1 python-ldap-2.4.27
Activating virtualenv at .venv


But the probelm is still there, and I think it is because there is this new folder auth in galaxy-dist/lib/galaxy/auth/.
And maybe it is looking from that
File "/home/galaxy/galaxy-dist/lib/galaxy/auth/providers/ldap_ad.py", line 118, in authenticate
    ldap.set_option(*opt)
File "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py", line 135, in set_option
    return _ldap_function_call(None,_ldap.set_option,option,invalue)
File "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py", line 66, in _ldap_function_call
    result = func(*args,**kwargs)
ValueError: option error


Any one has this error ?

Mohamed


2017-02-24 9:47 GMT+01:00 Gildas Le Corguillé <lecorgui...@sb-roscoff.fr <mailto:lecorgui...@sb-roscoff.fr>>:

    Hi Mohamed,

    Have you try to remove (and backup if you want) the whole .venn
    folder?
    Galaxy will create a new one with all its needs.

    Best

    Gildas

    -----------------------------------------------------------------
    Gildas Le Corguillé - Bioinformatician/Bioanalyste

    Plateform ABiMS (Analyses and Bioinformatics for Marine Science)
    http://abims.sb-roscoff.fr

    Member of the Workflow4Metabolomics project
    http://workflow4metabolomics.org <http://workflow4metabolomics.org/>

    Station Biologique de Roscoff - UPMC/CNRS - FR2424
    Place Georges Teissier 29680 Roscoff FRANCE
    tel: +33 2 98 29 23 81 <tel:02%2098%2029%2023%2081>
    ------------------------------------------------------------------



    Le 24 févr. 2017 à 09:42, Mohamed Kassam <k.mam...@gmail.com
    <mailto:k.mam...@gmail.com>> a écrit :

    Hello
    i tried to install via root and maybe it works,

    However now the bash run.sh it is working, however my ldap is not
    working I have password incorrect and I get this error in the
    terminal :

    galaxy.auth.providers.ldap_ad ERROR 2017-02-24 10:52:24,672 LDAP
    authenticate: search exception
    Traceback (most recent call last):
      File
    "/home/galaxy/galaxy-dist/lib/galaxy/auth/providers/ldap_ad.py",
    line 118, in authenticate
        ldap.set_option(*opt)
      File
    
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
    line 135, in set_option
        return _ldap_function_call(None,_ldap.set_option,option,invalue)
      File
    
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
    line 66, in _ldap_function_call
        result = func(*args,**kwargs)
    ValueError: option error


    Any idea ?

    Thanks,

    Mohamed

    2017-02-24 9:11 GMT+01:00 Mohamed Kassam <k.mam...@gmail.com
    <mailto:k.mam...@gmail.com>>:

        Dear all,

        I have migrate my old version of Galaxy to the new release
        V17.01, And I am facing this error when I am running run.sh,
        any clue ?

        Installing collected packages: python-ldap
          Found existing installation: python-ldap 2.4.17
            DEPRECATION: Uninstalling a distutils installed project
        (python-ldap) has been deprecated and will be removed in a
        future version. This is due to the fact that uninstalling a
        distutils project will only partially uninstall the project.
            Can't uninstall 'python-ldap'. No files were found to
        uninstall.
          Can't roll back python-ldap; was not uninstalled
        Exception:
        Traceback (most recent call last):
          File
        
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/basecommand.py",
        line 215, in main
            status = self.run(options, args)
          File
        
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/commands/install.py",
        line 342, in run
            prefix=options.prefix_path,
          File
        
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_set.py",
        line 784, in install
            **kwargs
          File
        
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_install.py",
        line 851, in install
        self.move_wheel_files(self.source_dir, root=root, prefix=prefix)
          File
        
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_install.py",
        line 1064, in move_wheel_files
            isolated=self.isolated,
          File
        
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/wheel.py",
        line 345, in move_wheel_files
            clobber(source, lib_dir, True)
          File
        
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/wheel.py",
        line 329, in clobber
            os.utime(destfile, (st.st_atime, st.st_mtime))
        OSError: [Errno 1] Operation not permitted:
        '/home/galaxy/galaxy-dist/.venv/lib64/python2.7/site-packages/dsml.pyo'


        Thanks,

        Mohamed


    ___________________________________________________________
    Please keep all replies on the list by using "reply all"
    in your mail client.  To manage your subscriptions to this
    and other Galaxy lists, please use the interface at:
    https://lists.galaxyproject.org/ <https://lists.galaxyproject.org/>

    To search Galaxy mailing lists use the unified search at:
    http://galaxyproject.org/search/mailinglists/
    <http://galaxyproject.org/search/mailinglists/>




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
   https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
   http://galaxyproject.org/search/mailinglists/

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to