On Sat, 8 Jul 2017 at 11:56 Matthias Bernt <m.be...@ufz.de> wrote:
> Hi Peter,
> > Code looks interesting. This is for Univa Grid Engine?
> In its current state its tailored for the Univa Grid Engine. But the drmaa
> library code that is based on job_info() and wait() should run on all grid
> For the command line based code changes might be necessary for the
> different grid engines. (Currently there is only a small bug, because
> wait() is currently
> called twice for finished jobs: in the repeated polling and then in the
> final check. The second call won't work which causes a fallback to qacct. I
> will fix this
> I guess that the output of qstat and qacct will be different. But I think
> this can be configured one just needs a way to get the info which grid
> engine is running.
> > In terms of the upload jobs, are those not designed to be run as 'local'
> jobs and not with the 'real user' setting?
> Sounds reasonable, but this is not what is happening on my installation of
> galaxy. Any idea where I could start to find the problem.
> I'm not an expert on this, but what does your job_conf.xml look like?
> Matthias ___________________________________________________________
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