Dear all,

I've been trying to properly install the "BAMTools split" tool in our
local DKFZ-Galaxy instance, but it doesn't work properly.

The strange thing is that you can launch a bamtools splitter job on our
cluster, but it never shows up in the history...until it fails with
following

"error":

"tool error

An error occurred with this dataset:
Unable to finish job"

All versions (Galaxy, bamtools 2.4.0,samtools 1.3.1) are up to date and
this is what I installed:

Repository                bamtools_split
Name:                      bamtools_split
Owner:                     devteam
Synopsis:                  Tool for splitting BAM files
Detailed description: Utility for splitting BAM files. It is based on
BAMtools suite of tools by Derek Barnett.
Content homepage:  https://github.com/pezmaster31/bamtools

Development repository:
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/bamtools/bamtools_split

Revision: 2:e2c1b62e1db1

Thanks and best regards,

Christopher


-- 
*Dr. Christopher Previti*
Genomics and Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician

German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4434

christopher.prev...@dkfz.de <http://www.dkfz.de/>
www.dkfz.de <http://www.dkfz.de/>

Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537

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