Would it make sense to change these tools to conda dependencies?
r-getopt and r-getopt are already in conda-forge so should be an easy
change.

On Mon, Jul 17, 2017 at 12:38 PM, Aysam Guerler <aysam.guer...@gmail.com> wrote:
> Hey,
>
> There is no documentation for this but it is possible. You need to install R
> and two R libraries (getopt, Matrix) in order to execute the charts
> R-script. Once R is configured you can add the charts tool to the tools
> directory and update your config/tool_conf.xml file accordingly before
> restarting your local instance.
>
> Having said this, can you specify in more detail why the tool installation
> fails. Can you install other tools from the toolshed without problems?
>
> I hope this helps.
>
> Thanks,
> Sam
>
> On Mon, Jul 17, 2017 at 9:53 AM, Steven Shen <ishenwei...@gmail.com> wrote:
>>
>> Hi all,
>>
>> Cytoscape, Bar diagram(NVD3), Horizontal(NVD3) , and other NVD3
>> visualization tools are working good on my local galaxy  except  the
>> jqplots, such as Box plot, Discrete Histogram,   with error "This
>> visualization requires the 'charts' tool. Please make sure it is installed."
>> It seems i need to install Charts first.
>>
>> Actually Charts could be installed from the Tool Shed through the Admin
>> Interface, but it failed sometimes as the bad network. so is there any doc
>> about installing Charts/tools through command line?
>>
>> Thank you.
>> Steven
>>
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>
>
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