I'm sorry,

I forgot to add the error log:


/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267:
 UserWarning: Unknown distribution option: 'setup_requires'
  warnings.warn(msg)
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267:
 UserWarning: Unknown distribution option: 'install_requires'
  warnings.warn(msg)
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267:
 UserWarning: Unknown distribution option: 'zip_safe'
  warnings.warn(msg)
Warning: Assuming default configuration (numexpr/tests/{setup_tests,setup}.py 
was not found)Traceback (most recent call last):
  File "setup.py", line 227, in <module>
    setup_package()
  File "setup.py", line 223, in setup_package
    setup(**metadata)
  File 
"/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/core.py",
 line 169, in setup
    return old_setup(**new_attr)
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/core.py",
 line 151, in setup
    dist.run_commands()
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py",
 line 953, in run_commands
    self.run_command(cmd)
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py",
 line 972, in run_command
    cmd_obj.run()
  File 
"/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/install.py",
 line 62, in run
    r = self.setuptools_run()
  File 
"/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/install.py",
 line 56, in setuptools_run
    self.do_egg_install()
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/install.py",
 line 109, in do_egg_install
    self.run_command('bdist_egg')
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/cmd.py",
 line 326, in run_command
    self.distribution.run_command(command)
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py",
 line 972, in run_command
    cmd_obj.run()
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/bdist_egg.py",
 line 151, in run
    self.run_command("egg_info")
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/cmd.py",
 line 326, in run_command
    self.distribution.run_command(command)
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py",
 line 972, in run_command
    cmd_obj.run()
  File 
"/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/egg_info.py",
 line 11, in run
    _egg_info.run(self)
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py",
 line 180, in run
    self.find_sources()
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py",
 line 207, in find_sources
    mm.run()
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py",
 line 291, in run
    self.add_defaults()
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py",
 line 320, in add_defaults
    sdist.add_defaults(self)
  File 
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/sdist.py",
 line 124, in add_defaults
    if not self.distribution.include_package_data:
AttributeError: NumpyDistribution instance has no attribute 
'include_package_data'


Thank you very much,


Lucille Delisle, PhD
PostDoc Duboule Lab
Laboratory of Developmental Genomics
EPFL SV ISREC UPDUB
SV 2843
Station 19
CH-1015 Lausanne
Tel : +41 21 693 97 08
________________________________
De : galaxy-dev <galaxy-dev-boun...@lists.galaxyproject.org> de la part de 
Delisle Lucille <lucille.deli...@epfl.ch>
Envoyé : lundi 24 juillet 2017 11:58
À : galaxy-dev@lists.galaxyproject.org
Objet : [galaxy-dev] Creating a tool dependency packages


Dear Galaxy list,


I do not know if it is the right place to ask my question. I would like to 
create a tool dependency package for numexpr (a python library).

I tried to do it taking examples from different tool dependency packages from 
iuc for example.

I added my repository to the testtoolshed but when I tried to install it. The 
directory lib/python of my tool is empty.

My repository is : 
package_python_2_7_numexpr_2_6_2<https://testtoolshed.g2.bx.psu.edu/repository/browse_repository?id=23c1f7fed262740a>

The big difference I see between the one from iuc and mine is the url:

For example, for pybigwig, the URL is : 
https://pypi.python.org/packages/source/p/pyBigWig/pyBigWig-0.1.9.tar.gz

For my library numexpr I could not find such a url so I put the one I thought 
would be the good one:

https://pypi.python.org/packages/31/43/7777ab9535c416faabd1865453389260fdad0a23a714609c13112885009a/numexpr-2.6.2.tar.gz#md5=943f8e4be7569b1ad01b10cbaa002a5c


Thank you very much for your help,



Lucille Delisle, PhD
PostDoc Duboule Lab
Laboratory of Developmental Genomics
EPFL SV ISREC UPDUB
SV 2843
Station 19
CH-1015 Lausanne
Tel : +41 21 693 97 08
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