Hello Evan, this looks suspiciously like a bug that Matthias Bernt has fixed on the development branch a while back. I have backported this to Galaxy release 17.01 and release 17.05.
If you update your galaxy branch to the latest commit it should work (or you should receive a more instructive error message). Hope that helps, Marius On 17 August 2017 at 18:32, evan clark <[email protected]> wrote: > I just ran across an issue when attempting to load galaxy. I am not sure > how to fix this issue or what could be causing it. Conda is installed > properly. > > File "/var/web_services/galaxy/lib/galaxy/webapps/galaxy/buildapp.py", > line 58, in paste_app_factory > app = galaxy.app.UniverseApplication( global_conf=global_conf, > **kwargs ) > File "/var/web_services/galaxy/lib/galaxy/app.py", line 113, in __init__ > self._configure_toolbox() > File "/var/web_services/galaxy/lib/galaxy/config.py", line 935, in > _configure_toolbox > self.toolbox = tools.ToolBox( tool_configs, self.config.tool_path, > self ) > File "/var/web_services/galaxy/lib/galaxy/tools/__init__.py", line 205, > in __init__ > app=app, > File "/var/web_services/galaxy/lib/galaxy/tools/toolbox/base.py", line > 1044, in __init__ > self._init_dependency_manager() > File "/var/web_services/galaxy/lib/galaxy/tools/toolbox/base.py", line > 1057, in _init_dependency_manager > self.dependency_manager = build_dependency_manager( self.app.config ) > File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line > 41, in build_dependency_manager > dependency_manager = DependencyManager( **dependency_manager_kwds ) > File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line > 84, in __init__ > self.dependency_resolvers = self.__build_dependency_resolvers( > conf_file ) > File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line > 193, in __build_dependency_resolvers > return self.__default_dependency_resolvers() > File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line > 201, in __default_dependency_resolvers > CondaDependencyResolver(self), > File "/var/web_services/galaxy/lib/galaxy/tools/deps/resolvers/conda.py", > line 134, in __init__ > self.disabled = not galaxy.tools.deps.installable. > ensure_installed(conda_context, install_conda, self.auto_init) > File "/var/web_services/galaxy/lib/galaxy/tools/deps/installable.py", > line 77, in ensure_installed > return ensure_installed(installable_context, auto_init) > TypeError: ensure_installed() takes exactly 3 arguments (2 given) > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/
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