Dear list,
I think I have messed up the environment for one tool (IntaRNA) -- can
someone tell me what to do to get a clear environment? Here is what
happened.
I have started the installation (via ansible) and accidentally aborted
it. Then the tool gave me the following error:
```
Failed to activate conda environment! Error was: CondaEnvironmentError:
Environment error: Cannot activate environment bash. User does not have
write access for conda symlinks. Fatal error: Exit code 1 (Error
occurred. Please check Tool Standard Error)
```
Since uninstalling and reinstallation (via ansible) gave the same result
I tried to reinstall from the Galaxy UI. Now I got (even if if the admin
interface list the tool as installed):
```
Fatal error: Exit code 127 (Error occurred. Please check Tool Standard
Error)
/gpfs1/data/galaxy_server/galaxy-dev/jobs_dir/000/362/tool_script.sh:
line 25: IntaRNA: command not found
```
Is there a list of directories and files that I could clear to get rid
of any trace of the tool and start anew?
Best,
Matthias
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.be...@ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
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