That doesn't change anything, I also using Galaxy within docker.
On 10/18/2017 06:27 PM, Deepak Tanwar wrote:
I am using Galaxy via Docker.
On Oct 18, 2017, at 11:51 AM, Devon Ryan <dprya...@gmail.com
<mailto:dprya...@gmail.com>> wrote:
Assuming you don't have galaxy set to clean up job working
directories upon failure, have a look at the tool_script.sh in that
directory and see if you can discern the issue. Also check the conda
activation log file (under working/ I think) in that directory to see
if it has anything useful.
Devon
On 10/18/2017 05:46 PM, Deepak Tanwar wrote:
Hello,
I am still facing problem. I have tried to reinstall MACS2 but
nothing helped.
Thank you!
Deepak
On Oct 16, 2017, at 4:00 PM, Deepak Tanwar <dktan...@hotmail.com
<mailto:dktan...@hotmail.com>> wrote:
Hi all,
There is some problem with MACS2:
export/galaxy-central/database/job_working_directory/000/380/tool_script.sh:
line 25: macs2: command not found Fatal error: Exit code 127 ()
Tool installed:
/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/macs2/f5d67c722d67/macs2
<http://toolshed.g2.bx.psu.edu/repos/iuc/macs2/f5d67c722d67/macs2>
Dependency Resolver Details
Dependency Version Resolver Exact version Current Installation
Status
macs2 2.1.1.20160309 Conda True
gawk 4.1.3 Conda True
Thank you,
Deepak
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--
Devon Ryan, PhD
Bioinformatician / Data manager
Bioinformatics Core Facility
Max Planck Institute for Immunobiology and Epigenetics
Email:dprya...@gmail.com
--
Devon Ryan, PhD
Bioinformatician / Data manager
Bioinformatics Core Facility
Max Planck Institute for Immunobiology and Epigenetics
Email: dprya...@gmail.com
___________________________________________________________
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