Ah ok, this is good news, then. Other than your local changes, you can just clone Galaxy again and start it with your old configs and database.
--nate On Thu, Oct 19, 2017 at 12:57 PM, Durdevic, Marija < marija.durde...@medunigraz.at> wrote: > Hi Nate, > > > Thanks a lot for your prompt response! > > > I stopped all the services immediately, umount the volume and run > recovery. It will take some time and hopefully I will have some results > tomorrow. > > In case not, I am asking for the worst case scenario. > > Luckily, galaxy database, all datasets, tool_shed and all tools were on > another location, so I still have them. He deleted only galaxy directory. > Of course, I had some local tools an wrappers there, but at least I hope I > can still do something. > > > Thanks once again! > > Best, > > Marija > ------------------------------ > *Von:* Nate Coraor <n...@bx.psu.edu> > *Gesendet:* Donnerstag, 19. Oktober 2017 18:36 > *An:* Durdevic, Marija > *Cc:* galaxy-dev@lists.galaxyproject.org > *Betreff:* Re: [galaxy-dev] Urgent help needed > > Hi Marija, > > Wow, sorry to hear this. If the datasets themselves were removed, it's > unlikely there'd be a way to get them back. Some filesystems do have > undelete tools to attempt to recover data that has not yet been > overwritten. If you can stop all activity on that filesystem while > investigating and attempt to recover, this would likely increase the amount > of data you'd be able to recover. > > It would be possible to reconnect to the database assuming it was not > SQLite and also removed. Your existing backed up configs should do this > automatically. This would restore your users and their Galaxy > representations of things, such as histories, but without the actual data > in those histories. > > --nate > > On Thu, Oct 19, 2017 at 10:32 AM, Durdevic, Marija < > marija.durde...@medunigraz.at> wrote: > >> Dear developers, >> >> >> >> The colleague of mine mistakenly deleted my Galaxy installation (rm –rf >> *). Unfortunately there is no backup of complete installation. I have >> backup only configuration files. >> >> Is there any chance to fetch new Galaxy instance from git and to connect >> it to the old database? Or maybe any other suggestion what to do in such >> case? >> >> >> >> Many thanks in advance! >> >> >> >> Best, >> >> Marija >> >> >> >> *Mag. Marija Đurđević* >> >> Core Facility Computational Bioanalytics >> >> >> >> Medical University of Graz >> >> Center for Medical Research >> >> Stiftingtalstraße 24 >> <https://maps.google.com/?q=Stiftingtalstra%C3%9Fe+24&entry=gmail&source=g>, >> A-8010 Graz >> >> Austria >> >> >> >> Phone: +43 316/385-73024 <%2B43%20316%2F385-73024> >> >> Fax:+43 316/385-73009 >> >> >> >> Email: marija.durde...@medunigraz.at >> >> Email: marija.djurdje...@klinikum-graz.at >> >> >> >> Web: https://zmf.medunigraz.at/ >> >> >> >> >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/ >> > >
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