Hi all
After running the recommended update I am now on branch 17.09. As part
of the update I set up a new virtual env running an additional python
2.7.6. My previous virtual env was running 2.6.6 which is a system
requirement for Centos 6.
All dependencies were installed and Galaxy starts fine, but no tools
run. The error is always a variation of this:
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
Traceback (most recent call last):
File
"galaxy-dist/database/jobs_directory/000/418/418014/set_metadata_4LcsZv.py",
line 1, in <module>
from galaxy_ext.metadata.set_metadata import set_metadata;
set_metadata()
File "galaxy-dist/lib/galaxy_ext/metadata/set_metadata.py", line 19,
in <module>
import json
ImportError: No module named json
I put some debug output at the top of set_metadata.py and it is indeed
running the correct python version from the virtual env. Needless to say
I can import json just fine using that python version. Any ideas?
Any help is greatly appreciated.
Thanks
Ulf
--
Ulf Schaefer, PhD
Bioinformatics Scientist
Bioinformatics Unit - Infectious Disease Informatics
National Infection Service
Public Health England
61 Colindale Ave, London NW9 5EQ
[email protected]
http://www.gov.uk/phe
Protecting and improving the nation’s health
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