Below is an error obtained from our galaxy install. We have custom
directories sets for the files directory and the jobs directory. Galaxy
appears to move the files but then attempts to look for them at the
original path. I have tried unsetting these options but it still persists.
galaxy.jobs DEBUG 2017-11-24 17:53:19,057 finish(): Moved
/var/web_services/galaxy/database/jobs_directory/000/320/galaxy_dataset_431.dat
to /mnt/ceph/home/galaxy/galaxy/files_directory/000/dataset_401.dat
galaxy.model.metadata DEBUG 2017-11-24 17:53:19,128 setting metadata
externally failed for HistoryDatasetAssociation 431: [Errno 2] No such
file or directory
galaxy.jobs.runners ERROR 2017-11-24 17:53:19,319 (320/179084) Job
wrapper finish method failed
Traceback (most recent call last):
File "/var/web_services/galaxy/lib/galaxy/jobs/runners/__init__.py",
line 630, in finish_job
job_state.job_wrapper.finish( stdout, stderr, exit_code )
File "/var/web_services/galaxy/lib/galaxy/jobs/__init__.py", line
1266, in finish
dataset.datatype.set_meta( dataset, overwrite=False )
File "/var/web_services/galaxy/lib/galaxy/datatypes/binary.py", line
391, in set_meta
exit_code = subprocess.call( args=command, stderr=open(
stderr_name, 'wb' ) )
File "/usr/lib64/python2.7/subprocess.py", line 524, in call
return Popen(*popenargs, **kwargs).wait()
File "/usr/lib64/python2.7/subprocess.py", line 711, in __init__
errread, errwrite)
File "/usr/lib64/python2.7/subprocess.py", line 1327, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
galaxy.jobs ERROR 2017-11-24 17:53:19,337 fail(): Missing output file in
working directory: [Errno 2] No such file or directory:
'/var/web_services/galaxy/database/jobs_directory/000/320/galaxy_dataset_431.dat'
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