Dear developers,
We are experiencing a job dispatching issue on our public galaxy instance (
https://galaxy.inf.ethz.ch/). On the compute machine, I am not able to
start the workers. The following messages got from the worker log file:
migrate.versioning.repository DEBUG 2018-01-30 12:23:41,816 Repository
lib/galaxy/model/migrate loaded successfully
migrate.versioning.repository DEBUG 2018-01-30 12:23:41,816 Config:
OrderedDict([('db_settings', OrderedDict([('__name__', 'db_settings'),
('repository_id', 'Galaxy'), ('version_table', 'migrate_version'),
('required_dbs', '[]')]))])
After this line, it is restarting the process again and stop at the same
message.
I have checked the status of the workers through supervisor few times and
it exited.
-bash-4.2$ supervisorctl status
galaxy:worker0 STARTING
galaxy:worker0 BACKOFF Exited too quickly (process log
may have details)
galaxy:worker0 FATAL Exited too quickly (process log
may have details)
my config/galaxy.ini
[server:worker0]
use = egg:Paste#http
port = 9999
host = COMPUTE.MACHINE.IP
use_threadpool = true
threadpool_workers = 5
config/job_conf.xml
<plugins workers="8">
<plugin id="condor" type="runner"
load="galaxy.jobs.runners.condor:CondorJobRunner" />
</plugins>
<handlers default="handlers">
<handler id="worker0" tags="handlers"/>
</handlers>
<destinations default="worker0">
<destination id="worker0" runner="condor">
<param id="request_cpus">1</param>
</destination>
</destinations>
config/galaxy_supervisor.conf
[program:galaxy_worker]
command = /tools/galaxy_ratschlab/.venv/bin/python
./lib/galaxy/main.py -c /tools/galaxy_ratschlab/config/galaxy.ini
--server-name=worker%(process_num)s
--log-file=/tools/galaxy_ratschlab/worker%(process_num)s.log
directory = /tools/galaxy_ratschlab
process_name = worker%(process_num)s
numprocs = 2
umask = 022
autostart = true
autorestart = true
startsecs = 20
user = galaxy
environment =
VIRTUAL_ENV="/tools/galaxy_ratschlab/.venv",PATH="/tools/galaxy_ratschlab/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",PYTHONHOME="/tools/galaxy_ratschlab/.venv"
I tried to restart but didn't help, anything wrong with my configuration?
Please let me know what you think and need.
Thanks in advance!
Vipin
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