Hi,
I have a problem with the output of rcorrector which I would like to
wrap. The input are single-end or paired-end fastq file/s and the output
is the name (name of the input file) of the files plus ".cor.fq" so for
example:
input: sample_R1.fastq, sample_R2.fastq
output: sample_R1.cor.fq, sample_R2.cor.fq
How can I catch the output? something like:
<data name="output1" format="fastq" label="${tool.name} on ${on_string}:
R1">
<discover_datasets pattern="$input1\_cor"/>
</data>
<data name="output2" format="fastq" label="${tool.name} on ${on_string}:
R2">
<discover_datasets pattern="$input2\_cor"/>
<filter>library['lib'] == 'paired'</filter>
</data>
but $input is the complete path ...
Has anyone an idea?
Cheer Jochen
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/
