We just stood up our first ever Genomics Virtual Lab appliance and used it to
spool up a Galaxy Cluster for doing bioinformatics work. We’ve worked a bit
with the original “Cloudman” application and the ver 17.05 revision of Galaxy
and it has worked fine, but we decided it might be a good time to migrate the
GVL platform because it uses the latest, greatest version of Galaxy and
provides additional tools, and the old “cloud man” approach has been
deprecated, giving us further incentive to make the switch. Unfortunately,
we’re encountering an error right out of the gate, when we spool up Galaxy
through GVL, before we do anything with it.
Within two minutes of Galaxy starting, we begin to see the following over and
over again in the Cluster Info Log:
20:55:20 - R_COMM channel basic get exception: [Errno 32] Broken pipe
In addition, we can’t seem to access any Spot worker node instances we
activate. They launch but are never recognized and used.
Not sure what this mean, as we are biologists, not informaticians nor python
experts. Any help would be most appreciated!
--Leon
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