Here is the documentation for Data Managers: https://galaxyproject.org/admin/tools/data-managers/ https://galaxyproject.org/admin/tools/data-managers/data-manager-xml-syntax/ https://galaxyproject.org/admin/tools/data-managers/data-manager-json-syntax/
I don't see any reference to removing entries from a Tool Data Table. Is there a technical reason why it can't be done? As I understand it, each Tool Data Table must have one column called 'value' that acts as a unique ID for that row of the table. So the data manager would just need the name of the Tool Data Table and a string to look up in the 'value' table, and it would remove that row if it found a match. In my case, another column in the Tool Data Table stores the path to a kmer database that should be removed from the disk. Will this be possible with the currently-available xml & json syntax? Are there any postgresql database entries that should be cleaned up if a Tool Data Table entry is removed? Is there some reason why this is a bad idea or is there another way of accomplishing this (removing Tool Data Table entries) that I've missed? Thanks Dan On Tue, Mar 27, 2018 at 2:09 PM, Dan Fornika <[email protected]> wrote: > Hello, > > I'm working on galaxy integration for an MLST tool called MentaLiST: > > https://github.com/WGS-TB/MentaLiST/tree/master/galaxy > > I've created data managers that create kmer databases and store their > locations in a Tool Data Table. I'd like to allow users to remove entries > from the Tool Data Table. Has anyone seen a Data Manager that provides that > functionality? Should I create separate data managers for add and remove > functionality, or can it be integrated into one? > > Thanks, > > Dan >
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