Hi Matthias, Sarah, UseGalaxy.eu had noticed this issue a while back. We filed https://github.com/galaxyproject/galaxy/issues/6724
And it was fixed in https://github.com/galaxyproject/galaxy/pull/6737 You may need to update to the latest 18.05/18.09 (and possibly rebuild client) Cheers, Helena On 2018-11-12 11:17, Matthias Bernt wrote: > Hi, > > I observed similar Problems on my Galaxy. But I think not all cases can be > explained by Martins answer. For instance, if I search for "hisat" I don't > get any result, but HISAT2 is definitely installed. > > Cheers, > Matthias > > > >Message: 1 > >Date: Fri, 9 Nov 2018 15:54:16 +0000 > >From: Sarah Maman <[email protected]> > >To: "[email protected]" > > <[email protected]> > >Subject: [galaxy-dev] Search box in tools menu / uncomplete wrappers > > list > >Message-ID: <[email protected]> > >Content-Type: text/plain; charset="iso-8859-1" > > > > > >Hello, > > > > > >When I'm searching a keyword in the « search » box in left « tools » menu, > >results are sometimes false because the wrappers' list generated by the > >query thanks to a keyword is not full, some tools are missing. In fact, some > >wrappers are not listed even if the keyword is in the tool name and/or the > >tool description. > > > >Could you please help us to understand why ? > > > > > >Thanks, > > > >Sarah Maman > > > > > > > > > >_____________________________ > >Sarah Maman > > > >Bioinformatique/Bioinformatics > > > >INRA | SIGENAE | GenPhySE > > > >Centre Inra Occitanie-Toulouse > >Tél. : +33(0)5.61.28.57.08 > > > >_____________________________ > > > >Chemin de Borde Rouge CS 52627 > >31326 Castanet Tolosan cedex > > > >www.toulouse.inra.fr<http://www.toulouse.inra.fr/> > > > >Suivez-nous sur Twitter ! > >-------------- next part -------------- > >An HTML attachment was scrubbed... > >URL: > ><https://lists.galaxyproject.org/pipermail/galaxy-dev/attachments/20181109/5edcc351/attachment-0001.html> > > > >------------------------------ > > > >Message: 2 > >Date: Fri, 9 Nov 2018 12:13:53 -0500 > >From: Martin Čech <[email protected]> > >To: Sarah Maman <[email protected]> > >Cc: "[email protected]" > > <[email protected]> > >Subject: Re: [galaxy-dev] Search box in tools menu / uncomplete > > wrappers list > >Message-ID: > > <CAHKBquHddNfir=sw6mgsty7breqezka9syzrwan+whnmieq...@mail.gmail.com> > >Content-Type: text/plain; charset="utf-8" > > > >Hi Sarah, > > > >toolpanel search in Galaxy is configurable. Due to limited space the > >default number of results shown is 20 so if there are more you are not > >going to see them. You can also change weights of various search attributes > >or use ngram search. Please see the config options explained in the sample > >here: > >https://github.com/galaxyproject/galaxy/blob/dev/config/galaxy.yml.sample#L1147 > > > >Please, let us know if you have more questions. > > > >Thanks, > > > >Martin > > > >On Fri, Nov 9, 2018 at 12:04 PM Sarah Maman <[email protected]> wrote: > > > >> > >>Hello, > >> > >> > >>When I’m searching a keyword in the « search » box in left « tools » menu, > >>results are sometimes false because the wrappers' list generated by the > >>query thanks to a keyword is not full, some tools are missing. In fact, > >>some wrappers are not listed even if the keyword is in the tool name and/or > >>the tool description. > >> > >>Could you please help us to understand why ? > >> > >> > >>Thanks, > >> > >>Sarah Maman > >> > >> > >> > >> > >> > >>*_____________________________ **Sarah* *Maman* > >> > >>Bioinformatique/Bioinformatics > >> > >>INRA | SIGENAE | GenPhySE > >> > >> > >>*Centre Inra Occitanie-Toulouse *Tél. : +33(0)5.61.28.57.08 > >><+33%205%2061%2028%2057%2008> > >> > >>*_____________________________* > >> > >>Chemin de Borde Rouge CS 52627 > >>31326 Castanet Tolosan cedex > >> > >>*www.toulouse.inra.fr* <http://www.toulouse.inra.fr/> > >> > >>*Suivez-nous sur Twitter !* > >>___________________________________________________________ > >>Please keep all replies on the list by using "reply all" > >>in your mail client. To manage your subscriptions to this > >>and other Galaxy lists, please use the interface at: > >> https://lists.galaxyproject.org/ > >> > >>To search Galaxy mailing lists use the unified search at: > >> http://galaxyproject.org/search/ > >-------------- next part -------------- > >An HTML attachment was scrubbed... > >URL: > ><https://lists.galaxyproject.org/pipermail/galaxy-dev/attachments/20181109/0c7c7b43/attachment-0001.html> > > > >------------------------------ > > > >Subject: Digest Footer > > > >_______________________________________________ > >galaxy-dev mailing list > >[email protected] > >https://lists.galaxyproject.org/listinfo/galaxy-dev > > > >To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > > >------------------------------ > > > >End of galaxy-dev Digest, Vol 149, Issue 3 > >****************************************** > > > > -- > > ------------------------------------------- > Matthias Bernt > Bioinformatics Service > Molekulare Systembiologie (MOLSYB) > Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ > Helmholtz Centre for Environmental Research GmbH - UFZ > Permoserstraße 15, 04318 Leipzig, Germany > Phone +49 341 235 482296, > [email protected], www.ufz.de > > Sitz der Gesellschaft/Registered Office: Leipzig > Registergericht/Registration Office: Amtsgericht Leipzig > Handelsregister Nr./Trade Register Nr.: B 4703 > Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig > Wilfried Kraus > Wissenschaftlicher Geschäftsführer/Scientific Managing Director: > Prof. Dr. Dr. h.c. Georg Teutsch > ------------------------------------------- > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
